miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26879 3' -51.8 NC_005809.1 + 18842 0.66 0.870025
Target:  5'- cGCugcuGCGCGC-CACCGaggcacuggcccGCGaccugGGCGCu -3'
miRNA:   3'- -CGuuu-UGCGCGaGUGGC------------UGCa----CUGCG- -5'
26879 3' -51.8 NC_005809.1 + 34381 0.66 0.870025
Target:  5'- gGCcguGCGCGaugaaaUCGCCGGCagcauccgGGCGCa -3'
miRNA:   3'- -CGuuuUGCGCg-----AGUGGCUGca------CUGCG- -5'
26879 3' -51.8 NC_005809.1 + 18621 0.66 0.870025
Target:  5'- gGC-AAAUGCcgacCUCGCCGGgCGUG-CGCc -3'
miRNA:   3'- -CGuUUUGCGc---GAGUGGCU-GCACuGCG- -5'
26879 3' -51.8 NC_005809.1 + 8118 0.66 0.870025
Target:  5'- uGCAc--CGCGCg-GCCGGCGUugguugugGGCGUg -3'
miRNA:   3'- -CGUuuuGCGCGagUGGCUGCA--------CUGCG- -5'
26879 3' -51.8 NC_005809.1 + 6635 0.66 0.870025
Target:  5'- aGCuucGCGCGCUUgGCCGGaGUGucCGCg -3'
miRNA:   3'- -CGuuuUGCGCGAG-UGGCUgCACu-GCG- -5'
26879 3' -51.8 NC_005809.1 + 1651 0.66 0.861713
Target:  5'- gGUAGGucuGCGCGUccugUUugCG-CGUGAUGCu -3'
miRNA:   3'- -CGUUU---UGCGCG----AGugGCuGCACUGCG- -5'
26879 3' -51.8 NC_005809.1 + 19178 0.66 0.861713
Target:  5'- cGCugccCGUGC-CGCCGGCGUcGAUGa -3'
miRNA:   3'- -CGuuuuGCGCGaGUGGCUGCA-CUGCg -5'
26879 3' -51.8 NC_005809.1 + 37624 0.66 0.861713
Target:  5'- cGCGAuACGCGg-CugCauCGUGGCGCc -3'
miRNA:   3'- -CGUUuUGCGCgaGugGcuGCACUGCG- -5'
26879 3' -51.8 NC_005809.1 + 31885 0.66 0.861713
Target:  5'- gGCcguGCGCGCU-GCCGuCaaGACGCa -3'
miRNA:   3'- -CGuuuUGCGCGAgUGGCuGcaCUGCG- -5'
26879 3' -51.8 NC_005809.1 + 40848 0.66 0.852276
Target:  5'- cGCGAggacuugGACGCcCUCGCCGGC---ACGCc -3'
miRNA:   3'- -CGUU-------UUGCGcGAGUGGCUGcacUGCG- -5'
26879 3' -51.8 NC_005809.1 + 32763 0.66 0.844334
Target:  5'- uGCGcAAACGCuGCUUGacugguUCGGCGUG-CGCg -3'
miRNA:   3'- -CGU-UUUGCG-CGAGU------GGCUGCACuGCG- -5'
26879 3' -51.8 NC_005809.1 + 38633 0.66 0.844334
Target:  5'- aGCAAauacAACGUGaccaUCGCgGACGgcaGCGCg -3'
miRNA:   3'- -CGUU----UUGCGCg---AGUGgCUGCac-UGCG- -5'
26879 3' -51.8 NC_005809.1 + 13897 0.66 0.844334
Target:  5'- aCGugGCGCGCcgCGCUGGCGaGGcCGCc -3'
miRNA:   3'- cGUuuUGCGCGa-GUGGCUGCaCU-GCG- -5'
26879 3' -51.8 NC_005809.1 + 18670 0.66 0.844334
Target:  5'- gGCAugGaa-GC-CGCgGGCGUGGCGCa -3'
miRNA:   3'- -CGUuuUgcgCGaGUGgCUGCACUGCG- -5'
26879 3' -51.8 NC_005809.1 + 26383 0.66 0.844334
Target:  5'- gGCGAAugGCGCg---UGGCGUcggugaacuccGACGCg -3'
miRNA:   3'- -CGUUUugCGCGagugGCUGCA-----------CUGCG- -5'
26879 3' -51.8 NC_005809.1 + 29422 0.66 0.844334
Target:  5'- cGCGuugcccACGCGCUCGC--ACGUcGCGCc -3'
miRNA:   3'- -CGUuu----UGCGCGAGUGgcUGCAcUGCG- -5'
26879 3' -51.8 NC_005809.1 + 31557 0.66 0.835284
Target:  5'- uGCAGcAgGUGUUCAUCGACGccaauACGCu -3'
miRNA:   3'- -CGUUuUgCGCGAGUGGCUGCac---UGCG- -5'
26879 3' -51.8 NC_005809.1 + 34844 0.66 0.835284
Target:  5'- aGCAAGcCG-GC-CGCCGAgCGUG-CGCu -3'
miRNA:   3'- -CGUUUuGCgCGaGUGGCU-GCACuGCG- -5'
26879 3' -51.8 NC_005809.1 + 13992 0.66 0.835284
Target:  5'- aCAccACGCuGCcggUgGCCGACGUG-CGCg -3'
miRNA:   3'- cGUuuUGCG-CG---AgUGGCUGCACuGCG- -5'
26879 3' -51.8 NC_005809.1 + 26233 0.66 0.835284
Target:  5'- cGCAGuuuuGCGCGCgUCGCCGAa--GGCa- -3'
miRNA:   3'- -CGUUu---UGCGCG-AGUGGCUgcaCUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.