Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26879 | 5' | -56.4 | NC_005809.1 | + | 4673 | 0.66 | 0.598083 |
Target: 5'- gGCGGGcaccagcGCGCCgGAUAGcGcggcgagaauGGCCGGCa -3' miRNA: 3'- -CGCCCa------UGUGGaCUAUC-Cu---------CCGGCUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 1018 | 0.66 | 0.587021 |
Target: 5'- aGCGucgaACACCUGGaAGGccacGGCCGGCg -3' miRNA: 3'- -CGCcca-UGUGGACUaUCCu---CCGGCUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 6262 | 0.66 | 0.575997 |
Target: 5'- gGUGcGGUugAUCUGcgcgcUGGGcAGGCCGAa -3' miRNA: 3'- -CGC-CCAugUGGACu----AUCC-UCCGGCUg -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 29026 | 0.66 | 0.554099 |
Target: 5'- cGUGGG--CACC-GAgucAGGcGGCCGACa -3' miRNA: 3'- -CGCCCauGUGGaCUa--UCCuCCGGCUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 28125 | 0.67 | 0.54324 |
Target: 5'- aCGcGGUACGCCUGGUcGGGcGGCa-GCa -3' miRNA: 3'- cGC-CCAUGUGGACUA-UCCuCCGgcUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 5508 | 0.67 | 0.542158 |
Target: 5'- aGCGccaacucGGUGC-CUUGGUAGuuccAGGCCGGCa -3' miRNA: 3'- -CGC-------CCAUGuGGACUAUCc---UCCGGCUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 11542 | 0.67 | 0.532453 |
Target: 5'- aGCGGGcau-CCUGAUAGGAcugcccGCCGGu -3' miRNA: 3'- -CGCCCauguGGACUAUCCUc-----CGGCUg -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 15500 | 0.67 | 0.520678 |
Target: 5'- gGCaGGGUuuGCAgUucugcggUGAUGGGcAGGCCGAUa -3' miRNA: 3'- -CG-CCCA--UGUgG-------ACUAUCC-UCCGGCUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 39130 | 0.67 | 0.511119 |
Target: 5'- cGCGGcGUcugugacCACCUGAuucuugagUAGcGGGGCCGAa -3' miRNA: 3'- -CGCC-CAu------GUGGACU--------AUC-CUCCGGCUg -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 41299 | 0.67 | 0.490149 |
Target: 5'- gGCGGGcauCACCUcGAaacuuGGGGGCCacuGACa -3' miRNA: 3'- -CGCCCau-GUGGA-CUau---CCUCCGG---CUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 35706 | 0.67 | 0.490149 |
Target: 5'- gGUGGacGUGCcgACgUGGUGGGGGGCCuACg -3' miRNA: 3'- -CGCC--CAUG--UGgACUAUCCUCCGGcUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 17201 | 0.68 | 0.449476 |
Target: 5'- -aGGGcuucugGCGCCUGcccGGuGGCCGGCu -3' miRNA: 3'- cgCCCa-----UGUGGACuauCCuCCGGCUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 5477 | 0.68 | 0.4396 |
Target: 5'- gGCGaGGUGUugCcGAUGGGGGGUaCGGCg -3' miRNA: 3'- -CGC-CCAUGugGaCUAUCCUCCG-GCUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 35487 | 0.68 | 0.429849 |
Target: 5'- cGUGGGcGCGCC--GUGGGuAGGCCGcgGCg -3' miRNA: 3'- -CGCCCaUGUGGacUAUCC-UCCGGC--UG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 24547 | 0.69 | 0.392157 |
Target: 5'- cGCGuGGUcGCGCagcgcggcGAUGGcGAGGCCGGCc -3' miRNA: 3'- -CGC-CCA-UGUGga------CUAUC-CUCCGGCUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 27021 | 0.7 | 0.331594 |
Target: 5'- gGCGccaUugACCUGGacguGGAGGCCGGCa -3' miRNA: 3'- -CGCcc-AugUGGACUau--CCUCCGGCUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 4366 | 0.71 | 0.323524 |
Target: 5'- uGCcGGUGCGCgUGAaGGcGAcGGCCGACu -3' miRNA: 3'- -CGcCCAUGUGgACUaUC-CU-CCGGCUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 37034 | 0.71 | 0.315602 |
Target: 5'- gGCGGGcg-ACCUGGgcggaaccUGGGcGGCCGGCg -3' miRNA: 3'- -CGCCCaugUGGACU--------AUCCuCCGGCUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 19025 | 0.72 | 0.271151 |
Target: 5'- aGUGGGUGCGguagcCCUGGUAgcGGccGCCGGCg -3' miRNA: 3'- -CGCCCAUGU-----GGACUAU--CCucCGGCUG- -5' |
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26879 | 5' | -56.4 | NC_005809.1 | + | 21511 | 1.12 | 0.00033 |
Target: 5'- aGCGGGUACACCUGAUAGGAGGCCGACa -3' miRNA: 3'- -CGCCCAUGUGGACUAUCCUCCGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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