miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2688 3' -56.1 NC_001491.2 + 10521 0.66 0.903217
Target:  5'- cCGCggCGUACCUGcGcGCCcgcGGCCGCAa -3'
miRNA:   3'- cGCGa-GUAUGGAU-CuCGG---CCGGUGUc -5'
2688 3' -56.1 NC_001491.2 + 33888 0.66 0.890115
Target:  5'- uGCGCUaCAacGCCgagGGGGCCcgGGCC-CGGg -3'
miRNA:   3'- -CGCGA-GUa-UGGa--UCUCGG--CCGGuGUC- -5'
2688 3' -56.1 NC_001491.2 + 2297 0.66 0.890115
Target:  5'- gGgGCUCGcGCCgAGAGCC-GCCGgGGc -3'
miRNA:   3'- -CgCGAGUaUGGaUCUCGGcCGGUgUC- -5'
2688 3' -56.1 NC_001491.2 + 77888 0.66 0.876099
Target:  5'- cGUGCUCuUACCagaggAGAGuUCGGCCAaCAu -3'
miRNA:   3'- -CGCGAGuAUGGa----UCUC-GGCCGGU-GUc -5'
2688 3' -56.1 NC_001491.2 + 145992 0.67 0.868758
Target:  5'- -aGCUCGUgggagaccACCUcccAGCCGGCCagaaGCAGg -3'
miRNA:   3'- cgCGAGUA--------UGGAuc-UCGGCCGG----UGUC- -5'
2688 3' -56.1 NC_001491.2 + 74023 0.67 0.868758
Target:  5'- cUGCUCucuGUGCCUAGAcCCcauGCCACGGc -3'
miRNA:   3'- cGCGAG---UAUGGAUCUcGGc--CGGUGUC- -5'
2688 3' -56.1 NC_001491.2 + 4808 0.67 0.868758
Target:  5'- gGCGC-CGaAgCUGGAGCCGGa-GCGGg -3'
miRNA:   3'- -CGCGaGUaUgGAUCUCGGCCggUGUC- -5'
2688 3' -56.1 NC_001491.2 + 100622 0.67 0.861203
Target:  5'- cGCGCcgUCGUcuCCagaUGGAacGUCGGCCACAGu -3'
miRNA:   3'- -CGCG--AGUAu-GG---AUCU--CGGCCGGUGUC- -5'
2688 3' -56.1 NC_001491.2 + 1560 0.68 0.820431
Target:  5'- aGgGCUCcacgGCCccAGcgccgcGCCGGCCGCAGg -3'
miRNA:   3'- -CgCGAGua--UGGa-UCu-----CGGCCGGUGUC- -5'
2688 3' -56.1 NC_001491.2 + 63741 0.68 0.80286
Target:  5'- aGCGCUCAUACgUcuuagaggaGGAGuCCGGCgCuccuCGGg -3'
miRNA:   3'- -CGCGAGUAUGgA---------UCUC-GGCCG-Gu---GUC- -5'
2688 3' -56.1 NC_001491.2 + 8648 0.69 0.765918
Target:  5'- uGCGCcCGUACCU--GGCCcgggGGCCAgGGg -3'
miRNA:   3'- -CGCGaGUAUGGAucUCGG----CCGGUgUC- -5'
2688 3' -56.1 NC_001491.2 + 145451 0.7 0.676689
Target:  5'- cGCGUUCuagccgacuacGUACCUGGAGCCuGUCugGCGGg -3'
miRNA:   3'- -CGCGAG-----------UAUGGAUCUCGGcCGG--UGUC- -5'
2688 3' -56.1 NC_001491.2 + 51246 0.7 0.676689
Target:  5'- gGUGCUCAUAUcgCUAGAGUCGcauaCCGCGGc -3'
miRNA:   3'- -CGCGAGUAUG--GAUCUCGGCc---GGUGUC- -5'
2688 3' -56.1 NC_001491.2 + 50129 0.7 0.666469
Target:  5'- uGCGCUCGUGCUUGGAucuGCCcGCCuuuaAGg -3'
miRNA:   3'- -CGCGAGUAUGGAUCU---CGGcCGGug--UC- -5'
2688 3' -56.1 NC_001491.2 + 3832 0.73 0.523074
Target:  5'- cCGCggcagCGgcgGCCUGGgccggguAGCCGGCCACGGc -3'
miRNA:   3'- cGCGa----GUa--UGGAUC-------UCGGCCGGUGUC- -5'
2688 3' -56.1 NC_001491.2 + 100720 0.73 0.514221
Target:  5'- cCGC-CAUACCgAG-GCCGGCCAUGGc -3'
miRNA:   3'- cGCGaGUAUGGaUCuCGGCCGGUGUC- -5'
2688 3' -56.1 NC_001491.2 + 2826 0.75 0.438611
Target:  5'- -gGCUCcgGCCUGGGccGCCGGCUcCAGg -3'
miRNA:   3'- cgCGAGuaUGGAUCU--CGGCCGGuGUC- -5'
2688 3' -56.1 NC_001491.2 + 34388 0.78 0.281162
Target:  5'- gGCGCUCcgAgccCCUGGAGCCGGCgGCc- -3'
miRNA:   3'- -CGCGAGuaU---GGAUCUCGGCCGgUGuc -5'
2688 3' -56.1 NC_001491.2 + 52031 1.1 0.002215
Target:  5'- cGCGCUCAUACCUAGAGCCGGCCACAGc -3'
miRNA:   3'- -CGCGAGUAUGGAUCUCGGCCGGUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.