Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26880 | 5' | -61.7 | NC_005809.1 | + | 15850 | 0.66 | 0.290419 |
Target: 5'- gUCCGUG-UCGUGCuGGUgCCA-CGCGCc -3' miRNA: 3'- -AGGUACgAGCGCGuCCG-GGUcGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 23756 | 0.66 | 0.290419 |
Target: 5'- gCCAUGCcggCGCcacCGGGCCgAuGCGcCGCg -3' miRNA: 3'- aGGUACGa--GCGc--GUCCGGgU-CGC-GCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 8182 | 0.66 | 0.288276 |
Target: 5'- cCCGgaUGCugccggcgauuucaUCGCGCAcGGCCUcguAGuCGCGCu -3' miRNA: 3'- aGGU--ACG--------------AGCGCGU-CCGGG---UC-GCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 37887 | 0.67 | 0.283324 |
Target: 5'- gCCAUuCUCGcCGCGcuaUCCGGCGCGCu -3' miRNA: 3'- aGGUAcGAGC-GCGUcc-GGGUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 7837 | 0.67 | 0.283324 |
Target: 5'- cCCAUGUUCaGCGCGauGGUgaGGCGgGCu -3' miRNA: 3'- aGGUACGAG-CGCGU--CCGggUCGCgCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 17063 | 0.67 | 0.283324 |
Target: 5'- aUCCuucacCUCGCGCacgaAGGCgaagCCGGCGCGg -3' miRNA: 3'- -AGGuac--GAGCGCG----UCCG----GGUCGCGCg -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 17255 | 0.67 | 0.283324 |
Target: 5'- aUCCcgGCgacgagCGCcggugGCAGGgCCGGC-CGCa -3' miRNA: 3'- -AGGuaCGa-----GCG-----CGUCCgGGUCGcGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 28224 | 0.67 | 0.281222 |
Target: 5'- uUCCAgGacaccgCGaaccaGCAGGCCCggcaguucagccaaGGCGCGCg -3' miRNA: 3'- -AGGUaCga----GCg----CGUCCGGG--------------UCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 34409 | 0.67 | 0.276366 |
Target: 5'- aUCCggGCgcaCGCGCAGGgaCgCAGCGC-Cg -3' miRNA: 3'- -AGGuaCGa--GCGCGUCCg-G-GUCGCGcG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 42385 | 0.67 | 0.276366 |
Target: 5'- gCCcgGCagCGUGaCGGuGCCCAGCgacaccgggGCGCa -3' miRNA: 3'- aGGuaCGa-GCGC-GUC-CGGGUCG---------CGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 15143 | 0.67 | 0.276366 |
Target: 5'- gCC-UGCggccgccgggCGCGguGcGCCaGGCGCGCg -3' miRNA: 3'- aGGuACGa---------GCGCguC-CGGgUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 12433 | 0.67 | 0.276366 |
Target: 5'- gUCCGacGCg-GUGCAGGCCggCGGCGUGUu -3' miRNA: 3'- -AGGUa-CGagCGCGUCCGG--GUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 28754 | 0.67 | 0.276366 |
Target: 5'- gUCCA-GCgcggUGCGCuu-CUCGGCGCGCa -3' miRNA: 3'- -AGGUaCGa---GCGCGuccGGGUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 5732 | 0.67 | 0.276366 |
Target: 5'- --gAUG-UCGCaCAGaucGCCCAGCGCGCc -3' miRNA: 3'- aggUACgAGCGcGUC---CGGGUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 27396 | 0.67 | 0.274305 |
Target: 5'- aUCCAUGUcgcucuuguagucgUCGCGC--GCCUGGCGCa- -3' miRNA: 3'- -AGGUACG--------------AGCGCGucCGGGUCGCGcg -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 18423 | 0.67 | 0.269546 |
Target: 5'- gCCGU-CgagGCGCuGGGCCaGGCGCGCa -3' miRNA: 3'- aGGUAcGag-CGCG-UCCGGgUCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 21151 | 0.67 | 0.262861 |
Target: 5'- gCCGUGUcCGCGCccuGGUucaaCAGCGCGg -3' miRNA: 3'- aGGUACGaGCGCGu--CCGg---GUCGCGCg -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 13795 | 0.67 | 0.262861 |
Target: 5'- aCCAggGCaaGCGCGacGCCguGCGCGCc -3' miRNA: 3'- aGGUa-CGagCGCGUc-CGGguCGCGCG- -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 15878 | 0.67 | 0.262861 |
Target: 5'- aUCUGuUGCUCGgGCacguaggugAGGCCCAGCaGCu- -3' miRNA: 3'- -AGGU-ACGAGCgCG---------UCCGGGUCG-CGcg -5' |
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26880 | 5' | -61.7 | NC_005809.1 | + | 9851 | 0.67 | 0.256312 |
Target: 5'- gUUUcgGCgUCGaugaGCGuGGCaCCGGCGCGCu -3' miRNA: 3'- -AGGuaCG-AGCg---CGU-CCG-GGUCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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