miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26883 5' -59.5 NC_005809.1 + 13017 0.75 0.121012
Target:  5'- aCGCGAuacCCCGAGCAcGGCGUGgguguccucuGCGGCCa -3'
miRNA:   3'- -GCGCU---GGGCUCGU-UCGCGC----------UGCUGGc -5'
26883 5' -59.5 NC_005809.1 + 13113 0.72 0.189652
Target:  5'- gCGCGcuucgucgccugguGCCagGAGCAccugGGCGCGACGugCGa -3'
miRNA:   3'- -GCGC--------------UGGg-CUCGU----UCGCGCUGCugGC- -5'
26883 5' -59.5 NC_005809.1 + 13549 0.67 0.390893
Target:  5'- -uCGACCUG-GCcgAAGCGCGGCGcCUGg -3'
miRNA:   3'- gcGCUGGGCuCG--UUCGCGCUGCuGGC- -5'
26883 5' -59.5 NC_005809.1 + 13791 0.76 0.09436
Target:  5'- gGCaACCaGGGCAAGCGCGACG-CCGu -3'
miRNA:   3'- gCGcUGGgCUCGUUCGCGCUGCuGGC- -5'
26883 5' -59.5 NC_005809.1 + 14005 0.68 0.3323
Target:  5'- gGUGGCCgaCGuGCGcGcCGCGAUGGCCGg -3'
miRNA:   3'- gCGCUGG--GCuCGUuC-GCGCUGCUGGC- -5'
26883 5' -59.5 NC_005809.1 + 14349 0.67 0.390893
Target:  5'- -cCGACCCGcGCGuggucgucGGCGUGGcCGACCu -3'
miRNA:   3'- gcGCUGGGCuCGU--------UCGCGCU-GCUGGc -5'
26883 5' -59.5 NC_005809.1 + 14742 0.68 0.324475
Target:  5'- gCGCGGCCggcgccaccgCGGGCAGcgcGCGCGAgGACg- -3'
miRNA:   3'- -GCGCUGG----------GCUCGUU---CGCGCUgCUGgc -5'
26883 5' -59.5 NC_005809.1 + 14873 0.7 0.273556
Target:  5'- gGCGAgCCGcuGCcGGCGCG-CGGCCu -3'
miRNA:   3'- gCGCUgGGCu-CGuUCGCGCuGCUGGc -5'
26883 5' -59.5 NC_005809.1 + 14959 0.72 0.201432
Target:  5'- -cCGGCCCaucGUAAGgGCGACGACCa -3'
miRNA:   3'- gcGCUGGGcu-CGUUCgCGCUGCUGGc -5'
26883 5' -59.5 NC_005809.1 + 15146 0.71 0.221145
Target:  5'- uGCGGCcgCCGGGCGcggugcgccaggcGCGCGACGACUa -3'
miRNA:   3'- gCGCUG--GGCUCGUu------------CGCGCUGCUGGc -5'
26883 5' -59.5 NC_005809.1 + 15390 0.67 0.417987
Target:  5'- cCGCGugC-GGGCcGGCGaagaugccgGACGACCGa -3'
miRNA:   3'- -GCGCugGgCUCGuUCGCg--------CUGCUGGC- -5'
26883 5' -59.5 NC_005809.1 + 15709 0.7 0.266162
Target:  5'- gGCGuccGCCUGGGCAucgaacuGGCGCGA-GGCCa -3'
miRNA:   3'- gCGC---UGGGCUCGU-------UCGCGCUgCUGGc -5'
26883 5' -59.5 NC_005809.1 + 16307 0.66 0.455829
Target:  5'- gCGCGAgCCGAcCAGGC-CGGCGGgugcCCGu -3'
miRNA:   3'- -GCGCUgGGCUcGUUCGcGCUGCU----GGC- -5'
26883 5' -59.5 NC_005809.1 + 16624 0.66 0.446193
Target:  5'- aCGaCGGCUacaaGGuCAAGCGCGGCGACa- -3'
miRNA:   3'- -GC-GCUGGg---CUcGUUCGCGCUGCUGgc -5'
26883 5' -59.5 NC_005809.1 + 16761 0.72 0.175199
Target:  5'- gGCGGCCCGGuGCAgaucaacgauaccgAGCGCGccgcgcgcaucGCGGCCa -3'
miRNA:   3'- gCGCUGGGCU-CGU--------------UCGCGC-----------UGCUGGc -5'
26883 5' -59.5 NC_005809.1 + 17906 0.8 0.053699
Target:  5'- aCGUGGCCCGcGGCGGGCGCGACaacACCa -3'
miRNA:   3'- -GCGCUGGGC-UCGUUCGCGCUGc--UGGc -5'
26883 5' -59.5 NC_005809.1 + 18870 0.66 0.436672
Target:  5'- cCGCGACCUGGGCGcuaccGGCcuguacGUGuccggccCGACCGa -3'
miRNA:   3'- -GCGCUGGGCUCGU-----UCG------CGCu------GCUGGC- -5'
26883 5' -59.5 NC_005809.1 + 19874 0.66 0.455829
Target:  5'- gGCGugCCGAagGCGucGCGCGccuucuUGGCCGu -3'
miRNA:   3'- gCGCugGGCU--CGUu-CGCGCu-----GCUGGC- -5'
26883 5' -59.5 NC_005809.1 + 20518 1.08 0.000416
Target:  5'- cCGCGACCCGAGCAAGCGCGACGACCGc -3'
miRNA:   3'- -GCGCUGGGCUCGUUCGCGCUGCUGGC- -5'
26883 5' -59.5 NC_005809.1 + 21810 0.67 0.408829
Target:  5'- gCGCGA--UGAGuCGAGCGCGGCGcagcGCCu -3'
miRNA:   3'- -GCGCUggGCUC-GUUCGCGCUGC----UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.