miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26883 5' -59.5 NC_005809.1 + 20518 1.08 0.000416
Target:  5'- cCGCGACCCGAGCAAGCGCGACGACCGc -3'
miRNA:   3'- -GCGCUGGGCUCGUUCGCGCUGCUGGC- -5'
26883 5' -59.5 NC_005809.1 + 17906 0.8 0.053699
Target:  5'- aCGUGGCCCGcGGCGGGCGCGACaacACCa -3'
miRNA:   3'- -GCGCUGGGC-UCGUUCGCGCUGc--UGGc -5'
26883 5' -59.5 NC_005809.1 + 13791 0.76 0.09436
Target:  5'- gGCaACCaGGGCAAGCGCGACG-CCGu -3'
miRNA:   3'- gCGcUGGgCUCGUUCGCGCUGCuGGC- -5'
26883 5' -59.5 NC_005809.1 + 26702 0.76 0.099478
Target:  5'- aCGUG-CCCGAGCAacagaucGGCGCGugGcACCa -3'
miRNA:   3'- -GCGCuGGGCUCGU-------UCGCGCugC-UGGc -5'
26883 5' -59.5 NC_005809.1 + 2740 0.75 0.108097
Target:  5'- gCGCGGCCCG-GCGcugcucgGGCGUGcCGACCa -3'
miRNA:   3'- -GCGCUGGGCuCGU-------UCGCGCuGCUGGc -5'
26883 5' -59.5 NC_005809.1 + 9313 0.75 0.114542
Target:  5'- gGCGACCUGGcggcGCAcgucGGCGCGGCGGgCGg -3'
miRNA:   3'- gCGCUGGGCU----CGU----UCGCGCUGCUgGC- -5'
26883 5' -59.5 NC_005809.1 + 13017 0.75 0.121012
Target:  5'- aCGCGAuacCCCGAGCAcGGCGUGgguguccucuGCGGCCa -3'
miRNA:   3'- -GCGCU---GGGCUCGU-UCGCGC----------UGCUGGc -5'
26883 5' -59.5 NC_005809.1 + 8733 0.75 0.121012
Target:  5'- uGUG-CCCG-GCGGGCGCGGCGcuACCGu -3'
miRNA:   3'- gCGCuGGGCuCGUUCGCGCUGC--UGGC- -5'
26883 5' -59.5 NC_005809.1 + 34516 0.74 0.142511
Target:  5'- aGCGACCUGGGCGcGCGUcaugGACGGCgGc -3'
miRNA:   3'- gCGCUGGGCUCGUuCGCG----CUGCUGgC- -5'
26883 5' -59.5 NC_005809.1 + 10208 0.74 0.146418
Target:  5'- gGCGGCCgGGGCcucgGCGGCGACCGc -3'
miRNA:   3'- gCGCUGGgCUCGuucgCGCUGCUGGC- -5'
26883 5' -59.5 NC_005809.1 + 30997 0.73 0.150422
Target:  5'- gGCGGCCCuGGGCGgcauGGCuuCGAUGACCGg -3'
miRNA:   3'- gCGCUGGG-CUCGU----UCGc-GCUGCUGGC- -5'
26883 5' -59.5 NC_005809.1 + 9512 0.73 0.15873
Target:  5'- gCGCGACCCGAugAAGCGC-ACGACa- -3'
miRNA:   3'- -GCGCUGGGCUcgUUCGCGcUGCUGgc -5'
26883 5' -59.5 NC_005809.1 + 16761 0.72 0.175199
Target:  5'- gGCGGCCCGGuGCAgaucaacgauaccgAGCGCGccgcgcgcaucGCGGCCa -3'
miRNA:   3'- gCGCUGGGCU-CGU--------------UCGCGC-----------UGCUGGc -5'
26883 5' -59.5 NC_005809.1 + 24441 0.72 0.176599
Target:  5'- gCGCGAgCCGGGCGacaAGUuCGACGuACCGg -3'
miRNA:   3'- -GCGCUgGGCUCGU---UCGcGCUGC-UGGC- -5'
26883 5' -59.5 NC_005809.1 + 13113 0.72 0.189652
Target:  5'- gCGCGcuucgucgccugguGCCagGAGCAccugGGCGCGACGugCGa -3'
miRNA:   3'- -GCGC--------------UGGg-CUCGU----UCGCGCUGCugGC- -5'
26883 5' -59.5 NC_005809.1 + 14959 0.72 0.201432
Target:  5'- -cCGGCCCaucGUAAGgGCGACGACCa -3'
miRNA:   3'- gcGCUGGGcu-CGUUCgCGCUGCUGGc -5'
26883 5' -59.5 NC_005809.1 + 10936 0.71 0.212188
Target:  5'- uGCagGGCCuCGGGCAGuuGCGCGGCGACa- -3'
miRNA:   3'- gCG--CUGG-GCUCGUU--CGCGCUGCUGgc -5'
26883 5' -59.5 NC_005809.1 + 42038 0.71 0.216068
Target:  5'- aGCGGCCCGcGCAcguccgagguauucGGCcaGCGAUGGCCc -3'
miRNA:   3'- gCGCUGGGCuCGU--------------UCG--CGCUGCUGGc -5'
26883 5' -59.5 NC_005809.1 + 15146 0.71 0.221145
Target:  5'- uGCGGCcgCCGGGCGcggugcgccaggcGCGCGACGACUa -3'
miRNA:   3'- gCGCUG--GGCUCGUu------------CGCGCUGCUGGc -5'
26883 5' -59.5 NC_005809.1 + 27306 0.71 0.229245
Target:  5'- gGCGACagCGGGCAAcuguuuGUGCGGCaGGCCGa -3'
miRNA:   3'- gCGCUGg-GCUCGUU------CGCGCUG-CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.