miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26884 5' -57.3 NC_005809.1 + 8105 0.66 0.540129
Target:  5'- gCGUUUGaggcccugcaccGCGCGGCCGGC-GUugGUUGUGg -3'
miRNA:   3'- -GCAAGC------------CGUGCCGGUCGuCG--UAGCAC- -5'
26884 5' -57.3 NC_005809.1 + 33785 0.66 0.540129
Target:  5'- ---cCGGCGCGGCCGaCc-CAUCGUGc -3'
miRNA:   3'- gcaaGCCGUGCCGGUcGucGUAGCAC- -5'
26884 5' -57.3 NC_005809.1 + 9224 0.66 0.529394
Target:  5'- aCGUUcugCGGCGCGcCCGGCGGCAg---- -3'
miRNA:   3'- -GCAA---GCCGUGCcGGUCGUCGUagcac -5'
26884 5' -57.3 NC_005809.1 + 32937 0.66 0.518738
Target:  5'- uGUUCGGcCAgGGCgaccaCGGCuGCGUCGa- -3'
miRNA:   3'- gCAAGCC-GUgCCG-----GUCGuCGUAGCac -5'
26884 5' -57.3 NC_005809.1 + 13274 0.66 0.518738
Target:  5'- aGUgcUgGGCAagGGCCAGCAGUucGUCGc- -3'
miRNA:   3'- gCA--AgCCGUg-CCGGUCGUCG--UAGCac -5'
26884 5' -57.3 NC_005809.1 + 21433 0.66 0.518738
Target:  5'- gGcgCGGacacgGCGGCCaagcugGGCAGCGUCGa- -3'
miRNA:   3'- gCaaGCCg----UGCCGG------UCGUCGUAGCac -5'
26884 5' -57.3 NC_005809.1 + 39824 0.66 0.508168
Target:  5'- aGUggUCGGCACGcCCgAGCAGCGcCGg- -3'
miRNA:   3'- gCA--AGCCGUGCcGG-UCGUCGUaGCac -5'
26884 5' -57.3 NC_005809.1 + 28255 0.66 0.49769
Target:  5'- aGUUCagccaaGGCGCGcGCCAGUucAGCAacgaCGUGg -3'
miRNA:   3'- gCAAG------CCGUGC-CGGUCG--UCGUa---GCAC- -5'
26884 5' -57.3 NC_005809.1 + 33934 0.66 0.49769
Target:  5'- ---aCGGCGCGGCCuGgGGCGUUu-- -3'
miRNA:   3'- gcaaGCCGUGCCGGuCgUCGUAGcac -5'
26884 5' -57.3 NC_005809.1 + 38226 0.66 0.49769
Target:  5'- ---cCGGCaacgcaACGGCCAGCAucaaggcugGCAccaUCGUGg -3'
miRNA:   3'- gcaaGCCG------UGCCGGUCGU---------CGU---AGCAC- -5'
26884 5' -57.3 NC_005809.1 + 29478 0.66 0.49769
Target:  5'- ----aGcGCGCGGCCAGUuccGCGUCGg- -3'
miRNA:   3'- gcaagC-CGUGCCGGUCGu--CGUAGCac -5'
26884 5' -57.3 NC_005809.1 + 28572 0.66 0.496648
Target:  5'- ---gCGGCGCgcacgucGGCCaccGGCAGCGUgGUGu -3'
miRNA:   3'- gcaaGCCGUG-------CCGG---UCGUCGUAgCAC- -5'
26884 5' -57.3 NC_005809.1 + 12435 0.67 0.48731
Target:  5'- cCGacgCGGUGCaGGCCGGCGGCGUg--- -3'
miRNA:   3'- -GCaa-GCCGUG-CCGGUCGUCGUAgcac -5'
26884 5' -57.3 NC_005809.1 + 1751 0.67 0.477033
Target:  5'- cCGggCGGuCAUGGCCGGCcugcgccuggcGCGUCGg- -3'
miRNA:   3'- -GCaaGCC-GUGCCGGUCGu----------CGUAGCac -5'
26884 5' -57.3 NC_005809.1 + 5111 0.67 0.477033
Target:  5'- gCGUcCGGUGCGGCUGGCGccguugaacuGCAaCGUGc -3'
miRNA:   3'- -GCAaGCCGUGCCGGUCGU----------CGUaGCAC- -5'
26884 5' -57.3 NC_005809.1 + 10021 0.67 0.466866
Target:  5'- uCGgagCGGCAUcGCCggcGGCAGCAUCcUGg -3'
miRNA:   3'- -GCaa-GCCGUGcCGG---UCGUCGUAGcAC- -5'
26884 5' -57.3 NC_005809.1 + 15235 0.67 0.463837
Target:  5'- --gUCGGCcCGGCCuacguggaaAGCaacgcgcgccugugGGCGUCGUGg -3'
miRNA:   3'- gcaAGCCGuGCCGG---------UCG--------------UCGUAGCAC- -5'
26884 5' -57.3 NC_005809.1 + 20016 0.67 0.450834
Target:  5'- --cUCGGCAUGGCgcgccugcaucacaGGCAGCAUCuUGu -3'
miRNA:   3'- gcaAGCCGUGCCGg-------------UCGUCGUAGcAC- -5'
26884 5' -57.3 NC_005809.1 + 28080 0.67 0.446873
Target:  5'- ----gGGCAggUGGCC-GCGGCGUCGUa -3'
miRNA:   3'- gcaagCCGU--GCCGGuCGUCGUAGCAc -5'
26884 5' -57.3 NC_005809.1 + 14013 0.67 0.446873
Target:  5'- aCGUgCGcGCcgcgAUGGCCGGCGGCcgcaagGUCGUGc -3'
miRNA:   3'- -GCAaGC-CG----UGCCGGUCGUCG------UAGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.