Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26885 | 3' | -53 | NC_005809.1 | + | 6254 | 0.66 | 0.780462 |
Target: 5'- cCGguAACggUGCgGUUgaucugCGCGCUGGGc -3' miRNA: 3'- cGCguUUG--ACGaCGAaa----GCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 5149 | 0.66 | 0.780462 |
Target: 5'- cGCGCAGGCggccgucGCUGCUcaCGCccuugGCgaGGGu -3' miRNA: 3'- -CGCGUUUGa------CGACGAaaGCG-----CGa-CCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 14769 | 0.66 | 0.780462 |
Target: 5'- cGCGCGAggacguGCUGCgGCUgcgcggCGCGCg--- -3' miRNA: 3'- -CGCGUU------UGACGaCGAaa----GCGCGaccc -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 29176 | 0.66 | 0.770037 |
Target: 5'- cCGCAAcgaUGCcGCcuacaaccgCGCGCUGGGc -3' miRNA: 3'- cGCGUUug-ACGaCGaaa------GCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 14427 | 0.66 | 0.770037 |
Target: 5'- gGCGCGc-CUGCgGCac-CGUGUUGGGc -3' miRNA: 3'- -CGCGUuuGACGaCGaaaGCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 20627 | 0.66 | 0.770037 |
Target: 5'- cGCGC--ACUG-UGCc--CGCGUUGGGc -3' miRNA: 3'- -CGCGuuUGACgACGaaaGCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 14870 | 0.66 | 0.759459 |
Target: 5'- gGCgGCGAGCcGCUGCcggCGCGC-GGc -3' miRNA: 3'- -CG-CGUUUGaCGACGaaaGCGCGaCCc -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 4382 | 0.66 | 0.759459 |
Target: 5'- uGCGCAGcCagGC-GCcgUCGCGCcGGGc -3' miRNA: 3'- -CGCGUUuGa-CGaCGaaAGCGCGaCCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 15101 | 0.66 | 0.759459 |
Target: 5'- uCGCGuGgUGCgUGCgcggCGCGCUGGc -3' miRNA: 3'- cGCGUuUgACG-ACGaaa-GCGCGACCc -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 31006 | 0.66 | 0.756257 |
Target: 5'- cGCGCGAcCUGUccacggGCUUgccggccgaggcaaUCGCGC-GGGc -3' miRNA: 3'- -CGCGUUuGACGa-----CGAA--------------AGCGCGaCCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 19387 | 0.67 | 0.715869 |
Target: 5'- gGC-CGAcCUGCUGCUgUCGCaccaGCaGGGg -3' miRNA: 3'- -CGcGUUuGACGACGAaAGCG----CGaCCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 11262 | 0.67 | 0.715869 |
Target: 5'- aGgGUuuGC-GCUGCg---GCGCUGGGa -3' miRNA: 3'- -CgCGuuUGaCGACGaaagCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 31072 | 0.67 | 0.715869 |
Target: 5'- aGCGCAGGC-GCUGCccUUUGCGgUGu- -3' miRNA: 3'- -CGCGUUUGaCGACGa-AAGCGCgACcc -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 25758 | 0.67 | 0.715869 |
Target: 5'- cGCGUGAACUGC-GC---CGC-CUGGGc -3' miRNA: 3'- -CGCGUUUGACGaCGaaaGCGcGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 42174 | 0.67 | 0.704716 |
Target: 5'- cCGCcguGCUGCUGgUgggCGCcCUGGGc -3' miRNA: 3'- cGCGuu-UGACGACgAaa-GCGcGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 23012 | 0.67 | 0.693486 |
Target: 5'- -gGCcuGCUGCUGCgccUGCuGUUGGGc -3' miRNA: 3'- cgCGuuUGACGACGaaaGCG-CGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 31983 | 0.67 | 0.693486 |
Target: 5'- gGUGCAGGCUGCg-----CGC-CUGGGu -3' miRNA: 3'- -CGCGUUUGACGacgaaaGCGcGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 22855 | 0.67 | 0.693486 |
Target: 5'- aGCGCGcGCUGCgaauuggGCUgcuucuggUUCGCGC-GGu -3' miRNA: 3'- -CGCGUuUGACGa------CGA--------AAGCGCGaCCc -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 20443 | 0.67 | 0.670849 |
Target: 5'- cGUGCAAAgcCUGUUcgaccGCgg-CGCGCUGGa -3' miRNA: 3'- -CGCGUUU--GACGA-----CGaaaGCGCGACCc -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 7001 | 0.67 | 0.670849 |
Target: 5'- cGCGCGAGCggGUcgGC--UCGCGUgaUGGGc -3' miRNA: 3'- -CGCGUUUGa-CGa-CGaaAGCGCG--ACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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