Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26885 | 3' | -53 | NC_005809.1 | + | 36824 | 0.78 | 0.187392 |
Target: 5'- gGCGC--ACUcGCUGCccggCGCGCUGGGc -3' miRNA: 3'- -CGCGuuUGA-CGACGaaa-GCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 2282 | 0.68 | 0.648054 |
Target: 5'- cGCGUAcAgUGCcGCgcggUCGaUGCUGGGg -3' miRNA: 3'- -CGCGUuUgACGaCGaa--AGC-GCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 12626 | 0.68 | 0.659465 |
Target: 5'- cGCGCucggcaucGCUGCUGCcguccUUUgGCGUcGGGu -3' miRNA: 3'- -CGCGuu------UGACGACG-----AAAgCGCGaCCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 23012 | 0.67 | 0.693486 |
Target: 5'- -gGCcuGCUGCUGCgccUGCuGUUGGGc -3' miRNA: 3'- cgCGuuUGACGACGaaaGCG-CGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 22855 | 0.67 | 0.693486 |
Target: 5'- aGCGCGcGCUGCgaauuggGCUgcuucuggUUCGCGC-GGu -3' miRNA: 3'- -CGCGUuUGACGa------CGA--------AAGCGCGaCCc -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 11262 | 0.67 | 0.715869 |
Target: 5'- aGgGUuuGC-GCUGCg---GCGCUGGGa -3' miRNA: 3'- -CgCGuuUGaCGACGaaagCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 31006 | 0.66 | 0.756257 |
Target: 5'- cGCGCGAcCUGUccacggGCUUgccggccgaggcaaUCGCGC-GGGc -3' miRNA: 3'- -CGCGUUuGACGa-----CGAA--------------AGCGCGaCCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 14427 | 0.66 | 0.770037 |
Target: 5'- gGCGCGc-CUGCgGCac-CGUGUUGGGc -3' miRNA: 3'- -CGCGUuuGACGaCGaaaGCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 6254 | 0.66 | 0.780462 |
Target: 5'- cCGguAACggUGCgGUUgaucugCGCGCUGGGc -3' miRNA: 3'- cGCguUUG--ACGaCGAaa----GCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 18822 | 0.68 | 0.625195 |
Target: 5'- gGCGCAGGaaGCUGCgaauUUUGCGC-GGc -3' miRNA: 3'- -CGCGUUUgaCGACGa---AAGCGCGaCCc -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 18042 | 0.69 | 0.576246 |
Target: 5'- -gGCGGGCUGCUugggggccuuaccgGCgcggggugCGUGCUGGGc -3' miRNA: 3'- cgCGUUUGACGA--------------CGaaa-----GCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 21187 | 0.74 | 0.320448 |
Target: 5'- uGCGCGGcCUGCUGCUggucugCGCGUUGc- -3' miRNA: 3'- -CGCGUUuGACGACGAaa----GCGCGACcc -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 36390 | 0.71 | 0.450498 |
Target: 5'- cUGCAAAC-GCUGCggcaagaccggccUGCGCUGGGa -3' miRNA: 3'- cGCGUUUGaCGACGaaa----------GCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 42166 | 0.71 | 0.459751 |
Target: 5'- cCGCGAcgUGCUGCUcaacagucgCGCGCUGGc -3' miRNA: 3'- cGCGUUugACGACGAaa-------GCGCGACCc -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 36605 | 0.7 | 0.491295 |
Target: 5'- gGUGUu-GCUGuUUGCUUaCGCGCUGGa -3' miRNA: 3'- -CGCGuuUGAC-GACGAAaGCGCGACCc -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 28251 | 0.7 | 0.506356 |
Target: 5'- uGCGcCAGGCucaccaUGUUGCgcaccaugaccgCGCGCUGGGa -3' miRNA: 3'- -CGC-GUUUG------ACGACGaaa---------GCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 25253 | 0.7 | 0.512871 |
Target: 5'- aGCGCAc-CUGUUGC--UCGCGCUGc- -3' miRNA: 3'- -CGCGUuuGACGACGaaAGCGCGACcc -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 39995 | 0.7 | 0.512871 |
Target: 5'- gGCgGCAAGC-GC-GCgcaCGCGCUGGGc -3' miRNA: 3'- -CG-CGUUUGaCGaCGaaaGCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 218 | 0.69 | 0.557104 |
Target: 5'- -gGCGAACUgGCgcaccucgGCauuggCGCGCUGGGu -3' miRNA: 3'- cgCGUUUGA-CGa-------CGaaa--GCGCGACCC- -5' |
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26885 | 3' | -53 | NC_005809.1 | + | 14769 | 0.66 | 0.780462 |
Target: 5'- cGCGCGAggacguGCUGCgGCUgcgcggCGCGCg--- -3' miRNA: 3'- -CGCGUU------UGACGaCGAaa----GCGCGaccc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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