miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26885 5' -54.3 NC_005809.1 + 1893 0.68 0.565548
Target:  5'- gGCCGGGUggGCGAAcagcAGCgGGAUuuuuccugcguuccaGUCGCg -3'
miRNA:   3'- gUGGCUCG--CGCUU----UCGaCCUA---------------CAGCG- -5'
26885 5' -54.3 NC_005809.1 + 6093 0.67 0.628345
Target:  5'- -gUCGAGCGCGGccuuGCgc-AUGUCGCa -3'
miRNA:   3'- guGGCUCGCGCUuu--CGaccUACAGCG- -5'
26885 5' -54.3 NC_005809.1 + 6445 0.69 0.506629
Target:  5'- cCACCGccCGCGAAGGCgucGccGUCGCg -3'
miRNA:   3'- -GUGGCucGCGCUUUCGac-CuaCAGCG- -5'
26885 5' -54.3 NC_005809.1 + 7245 0.67 0.65089
Target:  5'- cCACUG-GCGCG--GGCc-GAUGUCGCc -3'
miRNA:   3'- -GUGGCuCGCGCuuUCGacCUACAGCG- -5'
26885 5' -54.3 NC_005809.1 + 12724 0.66 0.706733
Target:  5'- uCGCCcGGCcCGuugguGCUGGGUGcCGCg -3'
miRNA:   3'- -GUGGcUCGcGCuuu--CGACCUACaGCG- -5'
26885 5' -54.3 NC_005809.1 + 12778 0.66 0.69567
Target:  5'- gCAUCGAGCGCGAGacAGCgu-AUGccgaaaucUCGCg -3'
miRNA:   3'- -GUGGCUCGCGCUU--UCGaccUAC--------AGCG- -5'
26885 5' -54.3 NC_005809.1 + 13198 0.72 0.378582
Target:  5'- gCGCCGAGUcCGAGGGCUGGGgcaaggccaccggCGCg -3'
miRNA:   3'- -GUGGCUCGcGCUUUCGACCUaca----------GCG- -5'
26885 5' -54.3 NC_005809.1 + 13603 0.67 0.639621
Target:  5'- aCACCuGGC-UGAAAGUcGGcAUGUCGCu -3'
miRNA:   3'- -GUGGcUCGcGCUUUCGaCC-UACAGCG- -5'
26885 5' -54.3 NC_005809.1 + 14046 0.74 0.271988
Target:  5'- aAUgGAGCGCGAAAGCccggcgcUGGgcGUCGUu -3'
miRNA:   3'- gUGgCUCGCGCUUUCG-------ACCuaCAGCG- -5'
26885 5' -54.3 NC_005809.1 + 14387 0.71 0.396061
Target:  5'- gCGCCGcggaacguaGGCGUagcGAAGCUGGgcGUCGCc -3'
miRNA:   3'- -GUGGC---------UCGCGc--UUUCGACCuaCAGCG- -5'
26885 5' -54.3 NC_005809.1 + 15156 0.69 0.48546
Target:  5'- gCGCCcAGgGCGAcGGCUG-AUGUUGCu -3'
miRNA:   3'- -GUGGcUCgCGCUuUCGACcUACAGCG- -5'
26885 5' -54.3 NC_005809.1 + 16772 0.66 0.69567
Target:  5'- cCACCGGcGaCGUGAAGGCgaug-GUCGCc -3'
miRNA:   3'- -GUGGCU-C-GCGCUUUCGaccuaCAGCG- -5'
26885 5' -54.3 NC_005809.1 + 17316 0.66 0.706733
Target:  5'- gACCGAGCaGCGcGAGCaacaGGUG-CGCu -3'
miRNA:   3'- gUGGCUCG-CGCuUUCGac--CUACaGCG- -5'
26885 5' -54.3 NC_005809.1 + 17491 0.77 0.172292
Target:  5'- gCGCCGGGCGCGcugcGCUGGGUGgcgaUGCu -3'
miRNA:   3'- -GUGGCUCGCGCuuu-CGACCUACa---GCG- -5'
26885 5' -54.3 NC_005809.1 + 19912 1.12 0.000542
Target:  5'- gCACCGAGCGCGAAAGCUGGAUGUCGCa -3'
miRNA:   3'- -GUGGCUCGCGCUUUCGACCUACAGCG- -5'
26885 5' -54.3 NC_005809.1 + 21427 0.69 0.539085
Target:  5'- aACCaGGGCGCGGAcacggcggccaAGCUGGGcagcGUCGa -3'
miRNA:   3'- gUGG-CUCGCGCUU-----------UCGACCUa---CAGCg -5'
26885 5' -54.3 NC_005809.1 + 24466 0.7 0.444456
Target:  5'- gUACCGgacGGCGCGAAGGCguccUGGu--UCGCg -3'
miRNA:   3'- -GUGGC---UCGCGCUUUCG----ACCuacAGCG- -5'
26885 5' -54.3 NC_005809.1 + 24906 0.72 0.359875
Target:  5'- gCGCCGGaaugaacguGCGCGAcuuGGGCUGGAUGaUGUc -3'
miRNA:   3'- -GUGGCU---------CGCGCU---UUCGACCUACaGCG- -5'
26885 5' -54.3 NC_005809.1 + 25754 0.69 0.539085
Target:  5'- aCGCUGGGCGCGcu-GCUGGgcGgcgGCa -3'
miRNA:   3'- -GUGGCUCGCGCuuuCGACCuaCag-CG- -5'
26885 5' -54.3 NC_005809.1 + 25833 0.67 0.628345
Target:  5'- cCGCCGuuGGCGcCGGucaguuccauGCUGGucuUGUCGCc -3'
miRNA:   3'- -GUGGC--UCGC-GCUuu--------CGACCu--ACAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.