miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26886 5' -57.1 NC_005809.1 + 19131 0.66 0.515425
Target:  5'- -aCGCGCGAACCAuccGCAuCCCGGc -3'
miRNA:   3'- ugGCGCGCUUGGUcuuCGUcGGGUUa -5'
26886 5' -57.1 NC_005809.1 + 24647 0.66 0.515425
Target:  5'- uGCCG-GCGGGCCAGGAugguguugucGC-GCCCGc- -3'
miRNA:   3'- -UGGCgCGCUUGGUCUU----------CGuCGGGUua -5'
26886 5' -57.1 NC_005809.1 + 31499 0.66 0.515425
Target:  5'- -gCGCGCGAcCCGGAcacguucgAGCAGUUCGu- -3'
miRNA:   3'- ugGCGCGCUuGGUCU--------UCGUCGGGUua -5'
26886 5' -57.1 NC_005809.1 + 6400 0.66 0.504703
Target:  5'- gGCCgGCcCGGugUAGucGCGGCCCAu- -3'
miRNA:   3'- -UGG-CGcGCUugGUCuuCGUCGGGUua -5'
26886 5' -57.1 NC_005809.1 + 32691 0.66 0.494078
Target:  5'- cGCCaCGCGccuGGCCgAGAAGCAGCgcgCCGGUg -3'
miRNA:   3'- -UGGcGCGC---UUGG-UCUUCGUCG---GGUUA- -5'
26886 5' -57.1 NC_005809.1 + 42123 0.66 0.494078
Target:  5'- cCCGCaaGCuGGCCGcGcAGCAGCCCAAc -3'
miRNA:   3'- uGGCG--CGcUUGGU-CuUCGUCGGGUUa -5'
26886 5' -57.1 NC_005809.1 + 24524 0.66 0.483557
Target:  5'- cCCGCGcCGGuaagGCCcccAAGCAGCCCGc- -3'
miRNA:   3'- uGGCGC-GCU----UGGuc-UUCGUCGGGUua -5'
26886 5' -57.1 NC_005809.1 + 12623 0.66 0.473144
Target:  5'- cGCCGCGaCGAcaagcaccACCuGAcuGGCaAGCCCAc- -3'
miRNA:   3'- -UGGCGC-GCU--------UGGuCU--UCG-UCGGGUua -5'
26886 5' -57.1 NC_005809.1 + 679 0.66 0.473144
Target:  5'- gGCCGCcuacgGCGGcGCCGGccGGGCcGCCCAAg -3'
miRNA:   3'- -UGGCG-----CGCU-UGGUC--UUCGuCGGGUUa -5'
26886 5' -57.1 NC_005809.1 + 16539 0.66 0.473144
Target:  5'- cGCCGCGCGGgcuuugauGCCAucgccGAGGaAGCCCu-- -3'
miRNA:   3'- -UGGCGCGCU--------UGGU-----CUUCgUCGGGuua -5'
26886 5' -57.1 NC_005809.1 + 9277 0.66 0.473144
Target:  5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3'
miRNA:   3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5'
26886 5' -57.1 NC_005809.1 + 9133 0.66 0.473144
Target:  5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3'
miRNA:   3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5'
26886 5' -57.1 NC_005809.1 + 8989 0.66 0.473144
Target:  5'- uGCCGCGauAGCCAGcGGUGGCCg--- -3'
miRNA:   3'- -UGGCGCgcUUGGUCuUCGUCGGguua -5'
26886 5' -57.1 NC_005809.1 + 34466 0.66 0.470042
Target:  5'- gGCCGCGCGGugCAG-GGCcucaaacgcuuuugGGCCUc-- -3'
miRNA:   3'- -UGGCGCGCUugGUCuUCG--------------UCGGGuua -5'
26886 5' -57.1 NC_005809.1 + 22702 0.66 0.462845
Target:  5'- -gCGCGCGAcGCCuucGGCAcGCCCGAa -3'
miRNA:   3'- ugGCGCGCU-UGGucuUCGU-CGGGUUa -5'
26886 5' -57.1 NC_005809.1 + 12989 0.67 0.452666
Target:  5'- aACCGCGCGc-CUGGgcGCGGCCg--- -3'
miRNA:   3'- -UGGCGCGCuuGGUCuuCGUCGGguua -5'
26886 5' -57.1 NC_005809.1 + 40553 0.67 0.452666
Target:  5'- cGCCuGCGCGAcuucGCCAGcGAGC-GCCUGGg -3'
miRNA:   3'- -UGG-CGCGCU----UGGUC-UUCGuCGGGUUa -5'
26886 5' -57.1 NC_005809.1 + 18845 0.67 0.442609
Target:  5'- uGCUGCGCGccACC-GAGGCacuGGCCCGc- -3'
miRNA:   3'- -UGGCGCGCu-UGGuCUUCG---UCGGGUua -5'
26886 5' -57.1 NC_005809.1 + 33807 0.67 0.43268
Target:  5'- cGCCGCGUGcuGCCcGAAGCGGCaCGu- -3'
miRNA:   3'- -UGGCGCGCu-UGGuCUUCGUCGgGUua -5'
26886 5' -57.1 NC_005809.1 + 602 0.67 0.422882
Target:  5'- gGCCGCcuGCGggUCGGccAGCAGCgCCGu- -3'
miRNA:   3'- -UGGCG--CGCuuGGUCu-UCGUCG-GGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.