Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26890 | 3' | -53.1 | NC_005809.1 | + | 38080 | 0.66 | 0.794989 |
Target: 5'- cGCCC-GUG-AGAUUAccguCGAUACCGAc -3' miRNA: 3'- -CGGGcCACgUCUAGUu---GCUAUGGCUc -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 38489 | 0.66 | 0.784914 |
Target: 5'- aCCaCGGcGCAGAUCAACGAauacaGCCu-- -3' miRNA: 3'- cGG-GCCaCGUCUAGUUGCUa----UGGcuc -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 3741 | 0.66 | 0.774672 |
Target: 5'- -gCCGGUGguGggCAcguCGGUGCCGc- -3' miRNA: 3'- cgGGCCACguCuaGUu--GCUAUGGCuc -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 23135 | 0.66 | 0.750544 |
Target: 5'- aGCCCGagaagucccgcaccGUGCAGGUCAaggacagcaugGgGAUGCUGGa -3' miRNA: 3'- -CGGGC--------------CACGUCUAGU-----------UgCUAUGGCUc -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 632 | 0.67 | 0.743061 |
Target: 5'- aGCCuCGGcGCGGGUgAACGGgucagGCgGGGg -3' miRNA: 3'- -CGG-GCCaCGUCUAgUUGCUa----UGgCUC- -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 19037 | 0.67 | 0.7366 |
Target: 5'- aGCCCuGGUaGCGgccgccggcggcgucGAUCAGCGuguccucGCCGAGg -3' miRNA: 3'- -CGGG-CCA-CGU---------------CUAGUUGCua-----UGGCUC- -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 22297 | 0.67 | 0.73227 |
Target: 5'- -aCUGGUGCGGG-CAACGAcgGCCa-- -3' miRNA: 3'- cgGGCCACGUCUaGUUGCUa-UGGcuc -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 33759 | 0.67 | 0.710384 |
Target: 5'- gGCCCGacccaGCAGAUCGguacugaccgGCGcgGCCGAc -3' miRNA: 3'- -CGGGCca---CGUCUAGU----------UGCuaUGGCUc -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 32716 | 0.67 | 0.699313 |
Target: 5'- cGCgCCGGUGCcacgcucAUCGACGccgaaACCGAGg -3' miRNA: 3'- -CG-GGCCACGuc-----UAGUUGCua---UGGCUC- -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 35022 | 0.67 | 0.688172 |
Target: 5'- -gCCGGUggcgccGCAGAUCGagcACGccGCCGAGc -3' miRNA: 3'- cgGGCCA------CGUCUAGU---UGCuaUGGCUC- -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 23953 | 0.68 | 0.676976 |
Target: 5'- cGCCCGGcG-AGGUCGGCauuUGCCGAu -3' miRNA: 3'- -CGGGCCaCgUCUAGUUGcu-AUGGCUc -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 10941 | 0.68 | 0.665734 |
Target: 5'- gGCCuCGG-GCAGuugcgCGGCGAcaGCCGGGg -3' miRNA: 3'- -CGG-GCCaCGUCua---GUUGCUa-UGGCUC- -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 37217 | 0.68 | 0.665734 |
Target: 5'- gGCgCGGUGCAGGcggccacgCAgcGCGAUGCCa-- -3' miRNA: 3'- -CGgGCCACGUCUa-------GU--UGCUAUGGcuc -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 13467 | 0.68 | 0.664608 |
Target: 5'- gGCgCGGUGuCGGGcaugaccUgGGCGAUGCCGAc -3' miRNA: 3'- -CGgGCCAC-GUCU-------AgUUGCUAUGGCUc -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 29939 | 0.68 | 0.654459 |
Target: 5'- aCCCaaaGGacgGCAG--CAGCGAUGCCGAGc -3' miRNA: 3'- cGGG---CCa--CGUCuaGUUGCUAUGGCUC- -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 42384 | 0.68 | 0.654459 |
Target: 5'- cGCCCGGcagcgUGaCGGugccCAGCGAcACCGGGg -3' miRNA: 3'- -CGGGCC-----AC-GUCua--GUUGCUaUGGCUC- -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 27775 | 0.68 | 0.643163 |
Target: 5'- cGCCgaGGUGCAGGUuucCAGCGAcAUCGuGa -3' miRNA: 3'- -CGGg-CCACGUCUA---GUUGCUaUGGCuC- -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 31099 | 0.68 | 0.631856 |
Target: 5'- cCUCGGUGCAGGcCGGCGAguggugCGAGa -3' miRNA: 3'- cGGGCCACGUCUaGUUGCUaug---GCUC- -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 32852 | 0.69 | 0.575528 |
Target: 5'- cGCCUGGccGCAGA-CGGuCGGcGCCGAGa -3' miRNA: 3'- -CGGGCCa-CGUCUaGUU-GCUaUGGCUC- -5' |
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26890 | 3' | -53.1 | NC_005809.1 | + | 11428 | 0.7 | 0.542244 |
Target: 5'- aGCCgGcGUGCAGGUCGccgauaaggcGCGAcACCGGc -3' miRNA: 3'- -CGGgC-CACGUCUAGU----------UGCUaUGGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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