miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26890 5' -62.3 NC_005809.1 + 22233 0.66 0.264186
Target:  5'- -aCGCGGCCcUgGUUGUCGgCCGCg-- -3'
miRNA:   3'- uaGCGCCGGuAgCAACGGC-GGCGggu -5'
26890 5' -62.3 NC_005809.1 + 9215 0.68 0.204361
Target:  5'- -gCGCGGCgCA-CGUucUGCgGCgCGCCCGg -3'
miRNA:   3'- uaGCGCCG-GUaGCA--ACGgCG-GCGGGU- -5'
26890 5' -62.3 NC_005809.1 + 3744 0.68 0.209772
Target:  5'- gGUgGUgGGCaCGUCGgUGCCGCCGCUgGa -3'
miRNA:   3'- -UAgCG-CCG-GUAGCaACGGCGGCGGgU- -5'
26890 5' -62.3 NC_005809.1 + 19154 0.68 0.215305
Target:  5'- -cCGuCaGCCAgauggaugCGUUGUCGCUGCCCGu -3'
miRNA:   3'- uaGC-GcCGGUa-------GCAACGGCGGCGGGU- -5'
26890 5' -62.3 NC_005809.1 + 38383 0.68 0.215305
Target:  5'- cUCGCGGCCAacaugcccgccaUCGagGCgGCCGgCUAc -3'
miRNA:   3'- uAGCGCCGGU------------AGCaaCGgCGGCgGGU- -5'
26890 5' -62.3 NC_005809.1 + 14297 0.67 0.244873
Target:  5'- -aUGCGGCCcacGUCGUUGCugaacuggCGCgCGCCUu -3'
miRNA:   3'- uaGCGCCGG---UAGCAACG--------GCG-GCGGGu -5'
26890 5' -62.3 NC_005809.1 + 12722 0.67 0.251177
Target:  5'- aGUCGCccGGcCCGUUGgugcugggUGCCGC-GCCCAg -3'
miRNA:   3'- -UAGCG--CC-GGUAGCa-------ACGGCGgCGGGU- -5'
26890 5' -62.3 NC_005809.1 + 28837 0.67 0.251177
Target:  5'- gGUUGCGGCCGgacUUGCCgaaGCUGuCCCAg -3'
miRNA:   3'- -UAGCGCCGGUagcAACGG---CGGC-GGGU- -5'
26890 5' -62.3 NC_005809.1 + 12625 0.67 0.257614
Target:  5'- -aCGCGcucGgCAUCGcUGCUGCCGUCCu -3'
miRNA:   3'- uaGCGC---CgGUAGCaACGGCGGCGGGu -5'
26890 5' -62.3 NC_005809.1 + 29995 0.69 0.190858
Target:  5'- cGUCGaacgGGCCAUCGUgcuccaacugcacgGCCGC-GCCCu -3'
miRNA:   3'- -UAGCg---CCGGUAGCAa-------------CGGCGgCGGGu -5'
26890 5' -62.3 NC_005809.1 + 38147 0.69 0.169788
Target:  5'- uGUUGCGGCCGg-GUacgaccuacgacUGCCGCaCGCUCAa -3'
miRNA:   3'- -UAGCGCCGGUagCA------------ACGGCG-GCGGGU- -5'
26890 5' -62.3 NC_005809.1 + 33992 0.69 0.169788
Target:  5'- gGUCGcCGuGaCCGUCGUgucgcgccUGUCGCUGCCCGc -3'
miRNA:   3'- -UAGC-GC-C-GGUAGCA--------ACGGCGGCGGGU- -5'
26890 5' -62.3 NC_005809.1 + 6414 0.73 0.092832
Target:  5'- aGUCGCGGCCcauGUCGUUGgCGCCuGUCaCGg -3'
miRNA:   3'- -UAGCGCCGG---UAGCAACgGCGG-CGG-GU- -5'
26890 5' -62.3 NC_005809.1 + 11565 0.73 0.095467
Target:  5'- -cCGcCGGUCAUCGaaGCCauGCCGCCCAg -3'
miRNA:   3'- uaGC-GCCGGUAGCaaCGG--CGGCGGGU- -5'
26890 5' -62.3 NC_005809.1 + 7555 0.71 0.131985
Target:  5'- cUCGCGGCCggGUCGUacuuaaucggauagUaGCCGCCGCgUAg -3'
miRNA:   3'- uAGCGCCGG--UAGCA--------------A-CGGCGGCGgGU- -5'
26890 5' -62.3 NC_005809.1 + 9992 0.7 0.148391
Target:  5'- -gCGUGGCgggGUCGaaagUGCCGCgCGCCCGg -3'
miRNA:   3'- uaGCGCCGg--UAGCa---ACGGCG-GCGGGU- -5'
26890 5' -62.3 NC_005809.1 + 32314 0.7 0.150009
Target:  5'- cAUCGCcGCCAUCaagGCCggcgucccgacaaccGCCGCCCAg -3'
miRNA:   3'- -UAGCGcCGGUAGcaaCGG---------------CGGCGGGU- -5'
26890 5' -62.3 NC_005809.1 + 20180 0.7 0.152464
Target:  5'- cUUGCGGCU-UCGccUUGUCGUCGCCCu -3'
miRNA:   3'- uAGCGCCGGuAGC--AACGGCGGCGGGu -5'
26890 5' -62.3 NC_005809.1 + 3875 0.7 0.156639
Target:  5'- cGUCGCuguaGGCCG-CGcUGCCGUCGCCg- -3'
miRNA:   3'- -UAGCG----CCGGUaGCaACGGCGGCGGgu -5'
26890 5' -62.3 NC_005809.1 + 32356 0.69 0.160916
Target:  5'- gGUCGCuGCgGUCGccGCCgaggccccgGCCGCCCAg -3'
miRNA:   3'- -UAGCGcCGgUAGCaaCGG---------CGGCGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.