Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26893 | 5' | -56.1 | NC_005809.1 | + | 8557 | 0.66 | 0.606773 |
Target: 5'- -cGCGC-CGAUGGCgggcagcgACAGGcGCGACa -3' miRNA: 3'- ucCGCGcGCUGCUGa-------UGUUCuCGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 26280 | 0.66 | 0.606773 |
Target: 5'- -cGUGCGCGACGACgacCGGGuagccuuccgGGUGGCc -3' miRNA: 3'- ucCGCGCGCUGCUGau-GUUC----------UCGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 22699 | 0.66 | 0.606773 |
Target: 5'- aAGGCGCGCGACGcCUucgGCAcGccCGAa -3' miRNA: 3'- -UCCGCGCGCUGCuGA---UGUuCucGCUg -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 15424 | 0.66 | 0.606773 |
Target: 5'- cGGCGCGUgGGgGACUuCGAGugaugcgcGCGGCg -3' miRNA: 3'- uCCGCGCG-CUgCUGAuGUUCu-------CGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 8917 | 0.66 | 0.595632 |
Target: 5'- cGGCGCGCucGAUGGCUuCGGGcGUgGACa -3' miRNA: 3'- uCCGCGCG--CUGCUGAuGUUCuCG-CUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 6293 | 0.66 | 0.581197 |
Target: 5'- gGGGCGC-CGG-GGCUuaucuccggugcguGCAAGAcGCGGCg -3' miRNA: 3'- -UCCGCGcGCUgCUGA--------------UGUUCU-CGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 38662 | 0.66 | 0.573454 |
Target: 5'- uGGGgGCGCGGCca-UGCGugaaAGCGACa -3' miRNA: 3'- -UCCgCGCGCUGcugAUGUuc--UCGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 24014 | 0.66 | 0.573454 |
Target: 5'- uGGGCGCGuCGGCcaauuCaGCGAaGGCGACg -3' miRNA: 3'- -UCCGCGC-GCUGcu---GaUGUUcUCGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 9210 | 0.66 | 0.573454 |
Target: 5'- cGGCgGCGCGGCGcacguuCUGCGGcgcgcccGGCGGCa -3' miRNA: 3'- uCCG-CGCGCUGCu-----GAUGUUc------UCGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 42123 | 0.66 | 0.573454 |
Target: 5'- uGGUGCGCGGCGA--GCAGaAG-GACa -3' miRNA: 3'- uCCGCGCGCUGCUgaUGUUcUCgCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 14425 | 0.66 | 0.573454 |
Target: 5'- cAGGCGCGCcuGCGGC-ACcguguuGGGCGAa -3' miRNA: 3'- -UCCGCGCGc-UGCUGaUGuu----CUCGCUg -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 26007 | 0.66 | 0.573453 |
Target: 5'- cGGCGCGUcGCG-CUACAacgucuauaaGGAGCaaGGCg -3' miRNA: 3'- uCCGCGCGcUGCuGAUGU----------UCUCG--CUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 37215 | 0.66 | 0.562435 |
Target: 5'- uGGGCGCGgugcaGGCGGCcACGcAGcGCGAUg -3' miRNA: 3'- -UCCGCGCg----CUGCUGaUGU-UCuCGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 32039 | 0.66 | 0.562434 |
Target: 5'- -uGCGCGUGGCGGCggaAAGcGUGGCc -3' miRNA: 3'- ucCGCGCGCUGCUGaugUUCuCGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 25132 | 0.66 | 0.562434 |
Target: 5'- uGGCcucgaugcugGCGgGGCcACUGCucAAGGGCGACg -3' miRNA: 3'- uCCG----------CGCgCUGcUGAUG--UUCUCGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 42388 | 0.66 | 0.562434 |
Target: 5'- cGGCaGCGUGACGG-UGCcc-AGCGACa -3' miRNA: 3'- uCCG-CGCGCUGCUgAUGuucUCGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 36018 | 0.67 | 0.551473 |
Target: 5'- aAGGaUGCGCuGACGcCUgGCGAuucGGGCGACg -3' miRNA: 3'- -UCC-GCGCG-CUGCuGA-UGUU---CUCGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 37801 | 0.67 | 0.551473 |
Target: 5'- uGGGCGCaGUGugGGCgaacgcCGAGAacaucGCGGCc -3' miRNA: 3'- -UCCGCG-CGCugCUGau----GUUCU-----CGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 20508 | 0.67 | 0.551473 |
Target: 5'- -cGCGCGCcgaccGCGACccgaGCAAGcGCGACg -3' miRNA: 3'- ucCGCGCGc----UGCUGa---UGUUCuCGCUG- -5' |
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26893 | 5' | -56.1 | NC_005809.1 | + | 31831 | 0.67 | 0.540578 |
Target: 5'- cGaGCGCGCccuuGGCGAgCaGCAAG-GCGACg -3' miRNA: 3'- uC-CGCGCG----CUGCU-GaUGUUCuCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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