miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26895 3' -58.5 NC_005809.1 + 23953 0.66 0.481736
Target:  5'- cGCCCGgCGAGGuCG-GCauUUGCCgAUUCa -3'
miRNA:   3'- -CGGGUgGCUCCuGCaCG--AGCGG-UAGG- -5'
26895 3' -58.5 NC_005809.1 + 24985 0.68 0.394013
Target:  5'- cGCCCACCcaccagcacaaaGGGGGCcgacgacagcgGgUUGCCGUCCg -3'
miRNA:   3'- -CGGGUGG------------CUCCUGca---------CgAGCGGUAGG- -5'
26895 3' -58.5 NC_005809.1 + 33851 0.68 0.395808
Target:  5'- cGCCCGCCGGGcacaucuuCGUGUUCGgCAgcaaUCUg -3'
miRNA:   3'- -CGGGUGGCUCcu------GCACGAGCgGU----AGG- -5'
26895 3' -58.5 NC_005809.1 + 13681 0.68 0.404864
Target:  5'- cGCgCACCguGAGGAUGUcgUCGgCGUCCa -3'
miRNA:   3'- -CGgGUGG--CUCCUGCAcgAGCgGUAGG- -5'
26895 3' -58.5 NC_005809.1 + 18083 0.67 0.455938
Target:  5'- gGgCCGCCGAagccggcgcgaaccaGGACGccuucgCGCCGUCCg -3'
miRNA:   3'- -CgGGUGGCU---------------CCUGCacga--GCGGUAGG- -5'
26895 3' -58.5 NC_005809.1 + 10747 0.66 0.471728
Target:  5'- uGCUCGCCaAGGGCGcGCUCGaCUucggCCc -3'
miRNA:   3'- -CGGGUGGcUCCUGCaCGAGC-GGua--GG- -5'
26895 3' -58.5 NC_005809.1 + 17264 0.66 0.471728
Target:  5'- gGCaaGCCGGGGAUa---UUGCCGUCCa -3'
miRNA:   3'- -CGggUGGCUCCUGcacgAGCGGUAGG- -5'
26895 3' -58.5 NC_005809.1 + 32539 0.66 0.471728
Target:  5'- uGCCgGCC-AGGAUGcUGC-CGCCGgcgaugCCg -3'
miRNA:   3'- -CGGgUGGcUCCUGC-ACGaGCGGUa-----GG- -5'
26895 3' -58.5 NC_005809.1 + 16771 0.66 0.481736
Target:  5'- -gCCACCGGcGACGUGaaggcgauggUCGCCAguugCCa -3'
miRNA:   3'- cgGGUGGCUcCUGCACg---------AGCGGUa---GG- -5'
26895 3' -58.5 NC_005809.1 + 3902 0.68 0.372884
Target:  5'- cGCCgAacuugguagauuucuUCGGGGGCGcGCU-GCCGUCCg -3'
miRNA:   3'- -CGGgU---------------GGCUCCUGCaCGAgCGGUAGG- -5'
26895 3' -58.5 NC_005809.1 + 27878 0.69 0.352538
Target:  5'- cGCUCGCCaucuuGGCGUGCUCGCCcagcacGUCg -3'
miRNA:   3'- -CGGGUGGcuc--CUGCACGAGCGG------UAGg -5'
26895 3' -58.5 NC_005809.1 + 27704 0.69 0.344296
Target:  5'- cGCgCGCCGGcaGCG-GCUCGCCG-CCg -3'
miRNA:   3'- -CGgGUGGCUccUGCaCGAGCGGUaGG- -5'
26895 3' -58.5 NC_005809.1 + 32460 0.71 0.243555
Target:  5'- cGCCCccuacuGCCGAGGugGggGCggccgaugCGCCcgaAUCCa -3'
miRNA:   3'- -CGGG------UGGCUCCugCa-CGa-------GCGG---UAGG- -5'
26895 3' -58.5 NC_005809.1 + 29940 0.71 0.249857
Target:  5'- gGCUUGCCagucAGGugGUGCUUGUCGUCg -3'
miRNA:   3'- -CGGGUGGc---UCCugCACGAGCGGUAGg -5'
26895 3' -58.5 NC_005809.1 + 26266 0.7 0.276417
Target:  5'- aCCCGCCGGccuGGuCG-GCUCGCgCAUCg -3'
miRNA:   3'- cGGGUGGCU---CCuGCaCGAGCG-GUAGg -5'
26895 3' -58.5 NC_005809.1 + 5217 0.7 0.297783
Target:  5'- uGCCCACguCGAGGAUGuUGgaCGCCAc-- -3'
miRNA:   3'- -CGGGUG--GCUCCUGC-ACgaGCGGUagg -5'
26895 3' -58.5 NC_005809.1 + 13504 0.7 0.305184
Target:  5'- cGCCUuugGgCGAGGuaaGCG-GUUUGCCGUCCg -3'
miRNA:   3'- -CGGG---UgGCUCC---UGCaCGAGCGGUAGG- -5'
26895 3' -58.5 NC_005809.1 + 13564 0.7 0.305184
Target:  5'- uGCCCACgGc-GAUGUugaacgcgcGCUCGCCAUCg -3'
miRNA:   3'- -CGGGUGgCucCUGCA---------CGAGCGGUAGg -5'
26895 3' -58.5 NC_005809.1 + 40868 0.69 0.32823
Target:  5'- -gCCACCGAcacgauGGACGaauuggucaugGCUCGCCgcgaGUCCa -3'
miRNA:   3'- cgGGUGGCU------CCUGCa----------CGAGCGG----UAGG- -5'
26895 3' -58.5 NC_005809.1 + 38364 0.69 0.336193
Target:  5'- aGCCgcaaGCCGc-GACGUGCUCGCgG-CCa -3'
miRNA:   3'- -CGGg---UGGCucCUGCACGAGCGgUaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.