miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26895 5' -57.9 NC_005809.1 + 2408 0.66 0.49294
Target:  5'- -aGGGCGGCAAgcGUAGGUgUACGGc -3'
miRNA:   3'- agCCCGUCGUUgcCGUUCAgGUGCCa -5'
26895 5' -57.9 NC_005809.1 + 1712 0.66 0.482628
Target:  5'- gUGGGCcggcgugccGGCGAgGGCGuccaAGUCCucGCGGg -3'
miRNA:   3'- aGCCCG---------UCGUUgCCGU----UCAGG--UGCCa -5'
26895 5' -57.9 NC_005809.1 + 33032 0.66 0.472422
Target:  5'- cUGGGCGGCAAguGCAAGUucCCGCGu- -3'
miRNA:   3'- aGCCCGUCGUUgcCGUUCA--GGUGCca -5'
26895 5' -57.9 NC_005809.1 + 23410 0.66 0.472422
Target:  5'- aCGGGCAGCGACaacGCA--UCCaucuggcugACGGUg -3'
miRNA:   3'- aGCCCGUCGUUGc--CGUucAGG---------UGCCA- -5'
26895 5' -57.9 NC_005809.1 + 5440 0.66 0.472422
Target:  5'- --uGGCGGCGugGGCGAGgu--CGGUa -3'
miRNA:   3'- agcCCGUCGUugCCGUUCagguGCCA- -5'
26895 5' -57.9 NC_005809.1 + 38690 0.67 0.452344
Target:  5'- uUC-GGCGGCGACGGCAG---CGCGGc -3'
miRNA:   3'- -AGcCCGUCGUUGCCGUUcagGUGCCa -5'
26895 5' -57.9 NC_005809.1 + 649 0.67 0.441501
Target:  5'- aCGGGUcaGGCGGgGGCuuuuGGUguuucugCCGCGGUa -3'
miRNA:   3'- aGCCCG--UCGUUgCCGu---UCA-------GGUGCCA- -5'
26895 5' -57.9 NC_005809.1 + 2219 0.67 0.403361
Target:  5'- gUCGGGUAGCAccacgcgcagcagGCGGCGcguGG-CCGCGc- -3'
miRNA:   3'- -AGCCCGUCGU-------------UGCCGU---UCaGGUGCca -5'
26895 5' -57.9 NC_005809.1 + 11402 0.68 0.395071
Target:  5'- aUGGGCcagggucuugAGCAGCGGCGAGcCgGCGu- -3'
miRNA:   3'- aGCCCG----------UCGUUGCCGUUCaGgUGCca -5'
26895 5' -57.9 NC_005809.1 + 3801 0.68 0.38599
Target:  5'- gUCGGGCAGCAugaccaGGCG-GUCgGgGGc -3'
miRNA:   3'- -AGCCCGUCGUug----CCGUuCAGgUgCCa -5'
26895 5' -57.9 NC_005809.1 + 35488 0.68 0.38599
Target:  5'- gUGGGCGcGcCGugGGUAGG-CCGCGGc -3'
miRNA:   3'- aGCCCGU-C-GUugCCGUUCaGGUGCCa -5'
26895 5' -57.9 NC_005809.1 + 26661 0.68 0.385089
Target:  5'- gUGGuucaucaGCAGCAGCGGCAAGcUgCugGGc -3'
miRNA:   3'- aGCC-------CGUCGUUGCCGUUC-AgGugCCa -5'
26895 5' -57.9 NC_005809.1 + 7063 0.68 0.379715
Target:  5'- cUCGGGCGGCAgcgucguuugaacagGCuGGCGguucuucacaccaAGUCCuccACGGUu -3'
miRNA:   3'- -AGCCCGUCGU---------------UG-CCGU-------------UCAGG---UGCCA- -5'
26895 5' -57.9 NC_005809.1 + 4042 0.68 0.351069
Target:  5'- cCGGccGCGGCgAGCGGCAGG-CCAgCGGc -3'
miRNA:   3'- aGCC--CGUCG-UUGCCGUUCaGGU-GCCa -5'
26895 5' -57.9 NC_005809.1 + 23657 0.69 0.33447
Target:  5'- gCGGGCAGCAACuGCAccAGgcgacCCuCGGUc -3'
miRNA:   3'- aGCCCGUCGUUGcCGU--UCa----GGuGCCA- -5'
26895 5' -57.9 NC_005809.1 + 4884 0.69 0.33447
Target:  5'- -aGcGCGGCGACGGCGgccucguuuucGG-CCACGGUg -3'
miRNA:   3'- agCcCGUCGUUGCCGU-----------UCaGGUGCCA- -5'
26895 5' -57.9 NC_005809.1 + 13628 0.7 0.288165
Target:  5'- aUC-GGUAGCGGCaGCAAGUCCggcGCGGc -3'
miRNA:   3'- -AGcCCGUCGUUGcCGUUCAGG---UGCCa -5'
26895 5' -57.9 NC_005809.1 + 9918 0.7 0.288165
Target:  5'- gUCGGGCAGCuucGCGGCGccgaacuucgacAGgacagcgaCCGCGGc -3'
miRNA:   3'- -AGCCCGUCGu--UGCCGU------------UCa-------GGUGCCa -5'
26895 5' -57.9 NC_005809.1 + 11324 0.7 0.280956
Target:  5'- cUCGGGCAG-AACGGCccauucguucAGGUCUugcaguACGGUg -3'
miRNA:   3'- -AGCCCGUCgUUGCCG----------UUCAGG------UGCCA- -5'
26895 5' -57.9 NC_005809.1 + 39340 0.7 0.2767
Target:  5'- cUCGGGCAgGUcgaauuauucaucguGGCgGGCAAGUCCAaucaGGUg -3'
miRNA:   3'- -AGCCCGU-CG---------------UUG-CCGUUCAGGUg---CCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.