Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26895 | 5' | -57.9 | NC_005809.1 | + | 649 | 0.67 | 0.441501 |
Target: 5'- aCGGGUcaGGCGGgGGCuuuuGGUguuucugCCGCGGUa -3' miRNA: 3'- aGCCCG--UCGUUgCCGu---UCA-------GGUGCCA- -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 1712 | 0.66 | 0.482628 |
Target: 5'- gUGGGCcggcgugccGGCGAgGGCGuccaAGUCCucGCGGg -3' miRNA: 3'- aGCCCG---------UCGUUgCCGU----UCAGG--UGCCa -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 2219 | 0.67 | 0.403361 |
Target: 5'- gUCGGGUAGCAccacgcgcagcagGCGGCGcguGG-CCGCGc- -3' miRNA: 3'- -AGCCCGUCGU-------------UGCCGU---UCaGGUGCca -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 2408 | 0.66 | 0.49294 |
Target: 5'- -aGGGCGGCAAgcGUAGGUgUACGGc -3' miRNA: 3'- agCCCGUCGUUgcCGUUCAgGUGCCa -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 3801 | 0.68 | 0.38599 |
Target: 5'- gUCGGGCAGCAugaccaGGCG-GUCgGgGGc -3' miRNA: 3'- -AGCCCGUCGUug----CCGUuCAGgUgCCa -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 4042 | 0.68 | 0.351069 |
Target: 5'- cCGGccGCGGCgAGCGGCAGG-CCAgCGGc -3' miRNA: 3'- aGCC--CGUCG-UUGCCGUUCaGGU-GCCa -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 4884 | 0.69 | 0.33447 |
Target: 5'- -aGcGCGGCGACGGCGgccucguuuucGG-CCACGGUg -3' miRNA: 3'- agCcCGUCGUUGCCGU-----------UCaGGUGCCA- -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 5440 | 0.66 | 0.472422 |
Target: 5'- --uGGCGGCGugGGCGAGgu--CGGUa -3' miRNA: 3'- agcCCGUCGUugCCGUUCagguGCCA- -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 7063 | 0.68 | 0.379715 |
Target: 5'- cUCGGGCGGCAgcgucguuugaacagGCuGGCGguucuucacaccaAGUCCuccACGGUu -3' miRNA: 3'- -AGCCCGUCGU---------------UG-CCGU-------------UCAGG---UGCCA- -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 8410 | 0.73 | 0.169894 |
Target: 5'- gUCGGGCAGCGA--GC-AGUUCGCGGg -3' miRNA: 3'- -AGCCCGUCGUUgcCGuUCAGGUGCCa -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 8567 | 0.72 | 0.210917 |
Target: 5'- gCGGGCAGCGACaGGCGcgacacgacGGU-CACGGc -3' miRNA: 3'- aGCCCGUCGUUG-CCGU---------UCAgGUGCCa -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 8774 | 0.71 | 0.234468 |
Target: 5'- uUCGGGCAGCAcGCGGCGcacgaugggucGG-CCGCGc- -3' miRNA: 3'- -AGCCCGUCGU-UGCCGU-----------UCaGGUGCca -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 9918 | 0.7 | 0.288165 |
Target: 5'- gUCGGGCAGCuucGCGGCGccgaacuucgacAGgacagcgaCCGCGGc -3' miRNA: 3'- -AGCCCGUCGu--UGCCGU------------UCa-------GGUGCCa -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 10944 | 0.72 | 0.216606 |
Target: 5'- cUCGGGCAGUugcGCGGCGAcagCCGgGGa -3' miRNA: 3'- -AGCCCGUCGu--UGCCGUUca-GGUgCCa -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 11324 | 0.7 | 0.280956 |
Target: 5'- cUCGGGCAG-AACGGCccauucguucAGGUCUugcaguACGGUg -3' miRNA: 3'- -AGCCCGUCgUUGCCG----------UUCAGG------UGCCA- -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 11402 | 0.68 | 0.395071 |
Target: 5'- aUGGGCcagggucuugAGCAGCGGCGAGcCgGCGu- -3' miRNA: 3'- aGCCCG----------UCGUUGCCGUUCaGgUGCca -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 13628 | 0.7 | 0.288165 |
Target: 5'- aUC-GGUAGCGGCaGCAAGUCCggcGCGGc -3' miRNA: 3'- -AGcCCGUCGUUGcCGUUCAGG---UGCCa -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 13730 | 0.72 | 0.202081 |
Target: 5'- cUGGGaCAGCuuCGGCAAGUCCggccgcaacccgacgACGGc -3' miRNA: 3'- aGCCC-GUCGuuGCCGUUCAGG---------------UGCCa -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 14644 | 1.08 | 0.00044 |
Target: 5'- gUCGGGCAGCAACGGCAAGUCCACGGUg -3' miRNA: 3'- -AGCCCGUCGUUGCCGUUCAGGUGCCA- -5' |
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26895 | 5' | -57.9 | NC_005809.1 | + | 14759 | 0.7 | 0.273891 |
Target: 5'- gCGGGCAGC-GCGcGCGAGgacgugCUGCGGc -3' miRNA: 3'- aGCCCGUCGuUGC-CGUUCa-----GGUGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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