Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26899 | 3' | -59.8 | NC_005809.1 | + | 13179 | 0.66 | 0.41877 |
Target: 5'- gGCCGCGCuGGgCGCCcuuGGCcggCGUUGu -3' miRNA: 3'- gUGGUGCG-CCaGCGGu--CCGaa-GCGAC- -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 1748 | 0.66 | 0.41877 |
Target: 5'- aCACCGgGCGGUCaugGCC-GGCcugCGcCUGg -3' miRNA: 3'- -GUGGUgCGCCAG---CGGuCCGaa-GC-GAC- -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 1184 | 0.66 | 0.41877 |
Target: 5'- uCGCCGcCGgGGUCgGCCGGGU--UGUUGg -3' miRNA: 3'- -GUGGU-GCgCCAG-CGGUCCGaaGCGAC- -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 28669 | 0.66 | 0.400296 |
Target: 5'- uGCCG-GCGGccUCGCCAGcGCggCGCg- -3' miRNA: 3'- gUGGUgCGCC--AGCGGUC-CGaaGCGac -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 34805 | 0.66 | 0.382351 |
Target: 5'- aCGCCgGCGCaGaucgCGCCGGuGCUgcaaUCGCUGa -3' miRNA: 3'- -GUGG-UGCGcCa---GCGGUC-CGA----AGCGAC- -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 35161 | 0.66 | 0.382351 |
Target: 5'- gGCCAUcCGGU-GCCcGGCUUCaaGCUGg -3' miRNA: 3'- gUGGUGcGCCAgCGGuCCGAAG--CGAC- -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 39023 | 0.67 | 0.36495 |
Target: 5'- uGCgGCGCGGUUGgCGGGaCUgCGCg- -3' miRNA: 3'- gUGgUGCGCCAGCgGUCC-GAaGCGac -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 27833 | 0.67 | 0.36495 |
Target: 5'- uGCC-CGCGGUggCGCCGGccGCgcCGCUGc -3' miRNA: 3'- gUGGuGCGCCA--GCGGUC--CGaaGCGAC- -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 2661 | 0.67 | 0.36495 |
Target: 5'- gGCCA-GCGGUCGCCcAGGUgUUCGa-- -3' miRNA: 3'- gUGGUgCGCCAGCGG-UCCG-AAGCgac -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 28166 | 0.67 | 0.348104 |
Target: 5'- gCGCCugGCGa-CGCCcaGCUUCGCUa -3' miRNA: 3'- -GUGGugCGCcaGCGGucCGAAGCGAc -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 13390 | 0.67 | 0.348104 |
Target: 5'- cCAgCGCGCGGUUG-UAGGCggcaUCGUUGc -3' miRNA: 3'- -GUgGUGCGCCAGCgGUCCGa---AGCGAC- -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 17472 | 0.67 | 0.339891 |
Target: 5'- gCACC-CGCuguaucccacGG-CGCCGGGCgcgcugCGCUGg -3' miRNA: 3'- -GUGGuGCG----------CCaGCGGUCCGaa----GCGAC- -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 30427 | 0.67 | 0.33182 |
Target: 5'- aCGCCuACGCGGaagcgcagCGCguGGCgcgUCGCg- -3' miRNA: 3'- -GUGG-UGCGCCa-------GCGguCCGa--AGCGac -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 24087 | 0.67 | 0.32389 |
Target: 5'- gACCGCGCGGg-GCaCGGGCacccCGCUa -3' miRNA: 3'- gUGGUGCGCCagCG-GUCCGaa--GCGAc -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 39691 | 0.68 | 0.303939 |
Target: 5'- uCACCGCGCuGGacauccucgaacuggUCGaaCCAGGCcccUCGCUGg -3' miRNA: 3'- -GUGGUGCG-CC---------------AGC--GGUCCGa--AGCGAC- -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 18500 | 0.68 | 0.300954 |
Target: 5'- -cCCGCGCGGUCGCCGcuaCUgugCGCg- -3' miRNA: 3'- guGGUGCGCCAGCGGUcc-GAa--GCGac -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 28232 | 0.68 | 0.292864 |
Target: 5'- gACCACGCGcGggucggacugCGCCAGGCUcaccaugUUGCg- -3' miRNA: 3'- gUGGUGCGC-Ca---------GCGGUCCGA-------AGCGac -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 39398 | 0.68 | 0.286372 |
Target: 5'- aCGCa--GCGGaCGCCGGGCUUgccaUGCUGc -3' miRNA: 3'- -GUGgugCGCCaGCGGUCCGAA----GCGAC- -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 3864 | 0.69 | 0.258889 |
Target: 5'- gUACCAgGCGccGUCGCUguAGGCcgCGCUGc -3' miRNA: 3'- -GUGGUgCGC--CAGCGG--UCCGaaGCGAC- -5' |
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26899 | 3' | -59.8 | NC_005809.1 | + | 16425 | 0.69 | 0.252364 |
Target: 5'- gGCCGCGgGGuaaUCGCC-GGCggCGUUGa -3' miRNA: 3'- gUGGUGCgCC---AGCGGuCCGaaGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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