Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26899 | 5' | -52.4 | NC_005809.1 | + | 18122 | 0.66 | 0.82038 |
Target: 5'- cGUCGGCGucAAUGUCGCcgaggccgCGCgCGGCa -3' miRNA: 3'- -CAGUUGC--UUAUAGUGca------GCGgGCCGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 14405 | 0.66 | 0.82038 |
Target: 5'- -gUAGCGAAgcuggGCGUCGCCaGGCg -3' miRNA: 3'- caGUUGCUUauag-UGCAGCGGgCCGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 31293 | 0.66 | 0.80873 |
Target: 5'- -gCAGCGAAgccuggcgacCGCGUggugGCCCGGCUg -3' miRNA: 3'- caGUUGCUUaua-------GUGCAg---CGGGCCGA- -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 14037 | 0.66 | 0.800802 |
Target: 5'- uGUCGuugGAAUGgagCGCGaaaGCCCGGCg -3' miRNA: 3'- -CAGUug-CUUAUa--GUGCag-CGGGCCGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 15697 | 0.66 | 0.790721 |
Target: 5'- aUCGACGAAgAagGCGUcCGCCUgGGCa -3' miRNA: 3'- cAGUUGCUUaUagUGCA-GCGGG-CCGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 11927 | 0.66 | 0.789703 |
Target: 5'- -cCGACGAAUugGUCuGCGcccucauUCGCgCCGGCUg -3' miRNA: 3'- caGUUGCUUA--UAG-UGC-------AGCG-GGCCGA- -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 12356 | 0.67 | 0.759459 |
Target: 5'- aUCGcCGAGUGcgugCGCGUgcucaaGCCCGGCg -3' miRNA: 3'- cAGUuGCUUAUa---GUGCAg-----CGGGCCGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 17715 | 0.67 | 0.749818 |
Target: 5'- cGUCGauaGCGggUAUCucgucacccugcaauCGUUGCCCGaGCc -3' miRNA: 3'- -CAGU---UGCuuAUAGu--------------GCAGCGGGC-CGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 23221 | 0.67 | 0.737893 |
Target: 5'- cUCAACGGcaAUUcCGcCGCCUGGCg -3' miRNA: 3'- cAGUUGCUuaUAGuGCaGCGGGCCGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 12599 | 0.67 | 0.737893 |
Target: 5'- cGUCGAUGAAUuugcgCAUGgcgccgacgCGCUCGGCa -3' miRNA: 3'- -CAGUUGCUUAua---GUGCa--------GCGGGCCGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 10001 | 0.67 | 0.726932 |
Target: 5'- gGUCGAa-AGUGcCGCG-CGCCCGGCc -3' miRNA: 3'- -CAGUUgcUUAUaGUGCaGCGGGCCGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 28022 | 0.67 | 0.726932 |
Target: 5'- --gGGCGggUuucucGUCGCuGUUGUCCGGCg -3' miRNA: 3'- cagUUGCuuA-----UAGUG-CAGCGGGCCGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 9208 | 0.68 | 0.704715 |
Target: 5'- cUCGGCGGcgcggcgCACGUucugcggcgCGCCCGGCg -3' miRNA: 3'- cAGUUGCUuaua---GUGCA---------GCGGGCCGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 17413 | 0.68 | 0.693486 |
Target: 5'- uUCAGCGGcgccCACGUCGCCCuugagcaguGGCc -3' miRNA: 3'- cAGUUGCUuauaGUGCAGCGGG---------CCGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 18413 | 0.68 | 0.670848 |
Target: 5'- cGUCGGCGAAgGUgGCGUUGUCCGcCg -3' miRNA: 3'- -CAGUUGCUUaUAgUGCAGCGGGCcGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 1107 | 0.69 | 0.648053 |
Target: 5'- uGUCGcGCGGcAUGUCGCGcaUCgGCCCGGUg -3' miRNA: 3'- -CAGU-UGCU-UAUAGUGC--AG-CGGGCCGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 25179 | 0.7 | 0.59553 |
Target: 5'- gGUCGGCGGguugaAUGUCAUGagcacgcgcgaccgcUgGCCCGGCUu -3' miRNA: 3'- -CAGUUGCU-----UAUAGUGC---------------AgCGGGCCGA- -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 38501 | 0.73 | 0.416499 |
Target: 5'- aUCAACGAAUAcagccugugggacaUCAaGUucCGCCCGGCUg -3' miRNA: 3'- cAGUUGCUUAU--------------AGUgCA--GCGGGCCGA- -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 40312 | 0.73 | 0.413575 |
Target: 5'- cGUCAACGuggugCGCGUCgaacugccggccaagGCCCGGCg -3' miRNA: 3'- -CAGUUGCuuauaGUGCAG---------------CGGGCCGa -5' |
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26899 | 5' | -52.4 | NC_005809.1 | + | 11313 | 1.07 | 0.00196 |
Target: 5'- gGUCAACGAAUAUCACGUCGCCCGGCUc -3' miRNA: 3'- -CAGUUGCUUAUAGUGCAGCGGGCCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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