miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26901 5' -55.7 NC_005809.1 + 393 0.66 0.608241
Target:  5'- aGCGCGGcCAGCGCGCGacuguuGAGCa-GCAc -3'
miRNA:   3'- gCGUGCU-GUCGUGCGCc-----CUUGaaCGU- -5'
26901 5' -55.7 NC_005809.1 + 456 0.71 0.328968
Target:  5'- uGCGCGGcCAGCuuGCGGGcGCUgucGCGg -3'
miRNA:   3'- gCGUGCU-GUCGugCGCCCuUGAa--CGU- -5'
26901 5' -55.7 NC_005809.1 + 491 0.71 0.345596
Target:  5'- uGCcuCGGCAGCAuacugcgcCGCGGcGGCUUGCAg -3'
miRNA:   3'- gCGu-GCUGUCGU--------GCGCCcUUGAACGU- -5'
26901 5' -55.7 NC_005809.1 + 4800 0.68 0.467604
Target:  5'- aCGC-CGGCuGGCGCuGCGGGAuuGCUggccgGCGa -3'
miRNA:   3'- -GCGuGCUG-UCGUG-CGCCCU--UGAa----CGU- -5'
26901 5' -55.7 NC_005809.1 + 5736 0.68 0.498809
Target:  5'- uCGCACaGAucgccCAGCGCGcCGGGcAGCgagUGCGc -3'
miRNA:   3'- -GCGUG-CU-----GUCGUGC-GCCC-UUGa--ACGU- -5'
26901 5' -55.7 NC_005809.1 + 8414 0.68 0.467604
Target:  5'- gGCAgCGAgCAGUuCGCGGGGGCgucGCGg -3'
miRNA:   3'- gCGU-GCU-GUCGuGCGCCCUUGaa-CGU- -5'
26901 5' -55.7 NC_005809.1 + 9325 0.71 0.312938
Target:  5'- gCGCACGuCGGCGCgGCGGGcGGCggcauccuuUUGCAg -3'
miRNA:   3'- -GCGUGCuGUCGUG-CGCCC-UUG---------AACGU- -5'
26901 5' -55.7 NC_005809.1 + 9527 1.08 0.000701
Target:  5'- gCGCACGACAGCACGCGGGAACUUGCAc -3'
miRNA:   3'- -GCGUGCUGUCGUGCGCCCUUGAACGU- -5'
26901 5' -55.7 NC_005809.1 + 9878 0.66 0.574789
Target:  5'- uGCACGcgGCgAGCACGuCGGcGAACU-GCu -3'
miRNA:   3'- gCGUGC--UG-UCGUGC-GCC-CUUGAaCGu -5'
26901 5' -55.7 NC_005809.1 + 13146 0.7 0.354134
Target:  5'- gGCGCGACgugcgAGCGCGUGGGcAACgcGCc -3'
miRNA:   3'- gCGUGCUG-----UCGUGCGCCC-UUGaaCGu -5'
26901 5' -55.7 NC_005809.1 + 13290 0.66 0.597057
Target:  5'- aGCGCcgauuGCAGCGCGCcGGGGCcgGCGu -3'
miRNA:   3'- gCGUGc----UGUCGUGCGcCCUUGaaCGU- -5'
26901 5' -55.7 NC_005809.1 + 14757 0.7 0.38975
Target:  5'- cCGCG-GGCAGCGCGCGcGaGGACgUGCu -3'
miRNA:   3'- -GCGUgCUGUCGUGCGC-C-CUUGaACGu -5'
26901 5' -55.7 NC_005809.1 + 15417 0.66 0.619448
Target:  5'- -cCGCGuGCGGCGCGUGgGGGACUucgagugaUGCGc -3'
miRNA:   3'- gcGUGC-UGUCGUGCGC-CCUUGA--------ACGU- -5'
26901 5' -55.7 NC_005809.1 + 17483 0.67 0.563725
Target:  5'- uGCACGaACAGCG-GCGaGAACUUGg- -3'
miRNA:   3'- gCGUGC-UGUCGUgCGCcCUUGAACgu -5'
26901 5' -55.7 NC_005809.1 + 20826 0.74 0.199723
Target:  5'- uGCGCGAgGGCuuuccgucauCGCGGGAACUgaccgacUGCAc -3'
miRNA:   3'- gCGUGCUgUCGu---------GCGCCCUUGA-------ACGU- -5'
26901 5' -55.7 NC_005809.1 + 22018 0.66 0.630666
Target:  5'- -uCAUGAgCAGCAaGCGGGGGCgccGCAu -3'
miRNA:   3'- gcGUGCU-GUCGUgCGCCCUUGaa-CGU- -5'
26901 5' -55.7 NC_005809.1 + 22533 0.68 0.498809
Target:  5'- aGCACGcGCAGCGCGCGcgugccGGugUUGUc -3'
miRNA:   3'- gCGUGC-UGUCGUGCGCc-----CUugAACGu -5'
26901 5' -55.7 NC_005809.1 + 22848 0.67 0.552718
Target:  5'- aGC-CGACAGCGCGCGcugcGAAUUggGCu -3'
miRNA:   3'- gCGuGCUGUCGUGCGCc---CUUGAa-CGu -5'
26901 5' -55.7 NC_005809.1 + 24072 0.67 0.530907
Target:  5'- gCGCACaguaGCGGCgaccGCGCGGGGcACggGCAc -3'
miRNA:   3'- -GCGUGc---UGUCG----UGCGCCCU-UGaaCGU- -5'
26901 5' -55.7 NC_005809.1 + 25745 0.69 0.437436
Target:  5'- --gGCGGCAGCACGCuGGGcGCgcUGCu -3'
miRNA:   3'- gcgUGCUGUCGUGCG-CCCuUGa-ACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.