miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26903 3' -59.8 NC_005809.1 + 41897 0.67 0.378093
Target:  5'- gGCCGgcGCCGCcGUAGgC-GCcuGGUGGCu -3'
miRNA:   3'- -CGGCa-CGGCGcUAUCgGuCG--CCACCG- -5'
26903 3' -59.8 NC_005809.1 + 4172 0.67 0.369438
Target:  5'- cGCCGUgGUCGagguGUAGCCAGUGG-GcGCc -3'
miRNA:   3'- -CGGCA-CGGCgc--UAUCGGUCGCCaC-CG- -5'
26903 3' -59.8 NC_005809.1 + 3924 0.67 0.360919
Target:  5'- gGCCGcGCCcccauGCGAguuugaaAGCCAGCGaacGGCg -3'
miRNA:   3'- -CGGCaCGG-----CGCUa------UCGGUCGCca-CCG- -5'
26903 3' -59.8 NC_005809.1 + 32039 0.67 0.344295
Target:  5'- uGCgCGUgGCgGCGGaaagcgUGGCCGGCGGUcaGCa -3'
miRNA:   3'- -CG-GCA-CGgCGCU------AUCGGUCGCCAc-CG- -5'
26903 3' -59.8 NC_005809.1 + 16435 0.67 0.344295
Target:  5'- aGCCGcugcgccaaaucUGCCGCGAcgaacacauGCCGGCa-UGGCg -3'
miRNA:   3'- -CGGC------------ACGGCGCUau-------CGGUCGccACCG- -5'
26903 3' -59.8 NC_005809.1 + 231 0.67 0.336193
Target:  5'- uGCCGcaUGuuGUag-GGCCGGCGGUaGCg -3'
miRNA:   3'- -CGGC--ACggCGcuaUCGGUCGCCAcCG- -5'
26903 3' -59.8 NC_005809.1 + 30976 0.67 0.336193
Target:  5'- aCUGcUGCCcgGCGGccAGCCGGCGGcccugGGCg -3'
miRNA:   3'- cGGC-ACGG--CGCUa-UCGGUCGCCa----CCG- -5'
26903 3' -59.8 NC_005809.1 + 41524 0.67 0.336193
Target:  5'- cGCCGguucGCgGCGAcaugcugccGCCGGCcGUGGCc -3'
miRNA:   3'- -CGGCa---CGgCGCUau-------CGGUCGcCACCG- -5'
26903 3' -59.8 NC_005809.1 + 19468 0.67 0.336193
Target:  5'- cGCUGUcGCCGUGGgcGCCGcCGuUGGCg -3'
miRNA:   3'- -CGGCA-CGGCGCUauCGGUcGCcACCG- -5'
26903 3' -59.8 NC_005809.1 + 36781 0.67 0.332991
Target:  5'- cGCUGgcgcUGCCGCGAUGGCgGGacacgauggucaaGGcccUGGCg -3'
miRNA:   3'- -CGGC----ACGGCGCUAUCGgUCg------------CC---ACCG- -5'
26903 3' -59.8 NC_005809.1 + 8836 0.68 0.32823
Target:  5'- gGCCa-GCCGCaacGcgGGCCAGCGcGuUGGCc -3'
miRNA:   3'- -CGGcaCGGCG---CuaUCGGUCGC-C-ACCG- -5'
26903 3' -59.8 NC_005809.1 + 30428 0.68 0.32823
Target:  5'- cGCCua--CGCGGaAGCgCAGCGcGUGGCg -3'
miRNA:   3'- -CGGcacgGCGCUaUCG-GUCGC-CACCG- -5'
26903 3' -59.8 NC_005809.1 + 3935 0.68 0.32352
Target:  5'- uGCCGU-CCGCGAUGGUCAcguuguauuuGCuggugccaucgaucaGGUGGUu -3'
miRNA:   3'- -CGGCAcGGCGCUAUCGGU----------CG---------------CCACCG- -5'
26903 3' -59.8 NC_005809.1 + 318 0.68 0.320408
Target:  5'- aCCGUcccuaCCGUca-GGCUGGCGGUGGCg -3'
miRNA:   3'- cGGCAc----GGCGcuaUCGGUCGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 18802 0.68 0.320407
Target:  5'- uUCGUaGCCGCGGcgcaucGGCC--CGGUGGCg -3'
miRNA:   3'- cGGCA-CGGCGCUa-----UCGGucGCCACCG- -5'
26903 3' -59.8 NC_005809.1 + 35031 0.68 0.320407
Target:  5'- cCCG-GCCGCGA--GCCAGCGuGcGGa -3'
miRNA:   3'- cGGCaCGGCGCUauCGGUCGC-CaCCg -5'
26903 3' -59.8 NC_005809.1 + 27476 0.68 0.312726
Target:  5'- cGCCGcGCacgcaccaCGCGAggauGCCGGCGGccucGGCc -3'
miRNA:   3'- -CGGCaCG--------GCGCUau--CGGUCGCCa---CCG- -5'
26903 3' -59.8 NC_005809.1 + 4178 0.68 0.312725
Target:  5'- aGCCG-GCCGCcucGAUGGCgGGCauguUGGCc -3'
miRNA:   3'- -CGGCaCGGCG---CUAUCGgUCGcc--ACCG- -5'
26903 3' -59.8 NC_005809.1 + 22246 0.68 0.308184
Target:  5'- uGUCG-GCCGCGAUGGCguauucgccggccguCAGCGaaUGGUg -3'
miRNA:   3'- -CGGCaCGGCGCUAUCG---------------GUCGCc-ACCG- -5'
26903 3' -59.8 NC_005809.1 + 7617 0.68 0.305184
Target:  5'- uGCCGUG--GUGAUGGUCAGgGGgcgcGGCu -3'
miRNA:   3'- -CGGCACggCGCUAUCGGUCgCCa---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.