Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26903 | 5' | -58.4 | NC_005809.1 | + | 4449 | 0.71 | 0.227041 |
Target: 5'- cCGCCAGCGGUGGCa---CCGUcAUg -3' miRNA: 3'- aGCGGUCGCCACCGgcacGGCAuUAa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 18366 | 0.71 | 0.221093 |
Target: 5'- uUUGCCGGCGGcgagguUGGCCuUGCCGa---- -3' miRNA: 3'- -AGCGGUCGCC------ACCGGcACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 35694 | 0.71 | 0.221093 |
Target: 5'- aUGCCAGCagauGGUGGaCGUGCCGa---- -3' miRNA: 3'- aGCGGUCG----CCACCgGCACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 16519 | 0.71 | 0.215278 |
Target: 5'- gUGCCGGUGGUcuGGCCGauauaGCCGUAc-- -3' miRNA: 3'- aGCGGUCGCCA--CCGGCa----CGGCAUuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 17268 | 0.71 | 0.209594 |
Target: 5'- gCGCCGGUGGcagGGCCG-GCCGc---- -3' miRNA: 3'- aGCGGUCGCCa--CCGGCaCGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 4273 | 0.71 | 0.209594 |
Target: 5'- gCGCCGGCauGGUgauGGCCGUGUCGgcGg- -3' miRNA: 3'- aGCGGUCG--CCA---CCGGCACGGCauUaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 14029 | 0.73 | 0.155228 |
Target: 5'- -gGCCGGCGGccgcaaGGUCGUGCCGUu--- -3' miRNA: 3'- agCGGUCGCCa-----CCGGCACGGCAuuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 8974 | 0.8 | 0.050584 |
Target: 5'- nUGCCAGC-GUGGCCGUGCCGcGAUn -3' miRNA: 3'- aGCGGUCGcCACCGGCACGGCaUUAa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 9286 | 0.92 | 0.00624 |
Target: 5'- -aGCCAGCGGUGGCCGUGCCGg---- -3' miRNA: 3'- agCGGUCGCCACCGGCACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 9142 | 0.92 | 0.00624 |
Target: 5'- -aGCCAGCGGUGGCCGUGCCGg---- -3' miRNA: 3'- agCGGUCGCCACCGGCACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 8998 | 0.92 | 0.00624 |
Target: 5'- -aGCCAGCGGUGGCCGUGCCGg---- -3' miRNA: 3'- agCGGUCGCCACCGGCACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 9333 | 0.92 | 0.005701 |
Target: 5'- nUGCCAGCGGUGGCCGUGCCGg---- -3' miRNA: 3'- aGCGGUCGCCACCGGCACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 9189 | 0.92 | 0.005701 |
Target: 5'- nUGCCAGCGGUGGCCGUGCCGg---- -3' miRNA: 3'- aGCGGUCGCCACCGGCACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 9093 | 0.92 | 0.005701 |
Target: 5'- nUGCCAGCGGUGGCCGUGCCGg---- -3' miRNA: 3'- aGCGGUCGCCACCGGCACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 9045 | 0.95 | 0.003214 |
Target: 5'- nUGCCAGCGGUGGCCGUGCCGUAn-- -3' miRNA: 3'- aGCGGUCGCCACCGGCACGGCAUuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 9380 | 0.97 | 0.002602 |
Target: 5'- uUCGCCAGCGGUGGCCGUGCCGa---- -3' miRNA: 3'- -AGCGGUCGCCACCGGCACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 9356 | 0.97 | 0.00245 |
Target: 5'- uUCGCCAGCGGUGGCCGUGCCGg---- -3' miRNA: 3'- -AGCGGUCGCCACCGGCACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 9236 | 0.97 | 0.00245 |
Target: 5'- uUCGCCAGCGGUGGCCGUGCCGg---- -3' miRNA: 3'- -AGCGGUCGCCACCGGCACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 9212 | 0.97 | 0.00245 |
Target: 5'- uUCGCCAGCGGUGGCCGUGCCGg---- -3' miRNA: 3'- -AGCGGUCGCCACCGGCACGGCauuaa -5' |
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26903 | 5' | -58.4 | NC_005809.1 | + | 9260 | 0.98 | 0.002107 |
Target: 5'- uUCGCCAGCGGUGGCCGUGCCGcGAUa -3' miRNA: 3'- -AGCGGUCGCCACCGGCACGGCaUUAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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