miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26904 3' -59.6 NC_005809.1 + 1878 0.66 0.449477
Target:  5'- cCCGUgGCCGG---CGCUGGCcGGgugGGCg -3'
miRNA:   3'- cGGCA-CGGCCuaaGCGGUCG-CCa--CCG- -5'
26904 3' -59.6 NC_005809.1 + 34381 0.66 0.449477
Target:  5'- gGCCGUG-CGcGAUgaaaUCGCCGGCaGcauccgGGCg -3'
miRNA:   3'- -CGGCACgGC-CUA----AGCGGUCGcCa-----CCG- -5'
26904 3' -59.6 NC_005809.1 + 4172 0.66 0.449477
Target:  5'- cGCCGUgGUCGaGGUguaGCCAGUGG-GcGCc -3'
miRNA:   3'- -CGGCA-CGGC-CUAag-CGGUCGCCaC-CG- -5'
26904 3' -59.6 NC_005809.1 + 3614 0.66 0.449477
Target:  5'- aCCGcGCauuuuGcUUCGCUGGCGGUGGUa -3'
miRNA:   3'- cGGCaCGgc---CuAAGCGGUCGCCACCG- -5'
26904 3' -59.6 NC_005809.1 + 39733 0.66 0.439858
Target:  5'- cGCUgGUGCUGG---CGCCGcuGCGcGUGGCc -3'
miRNA:   3'- -CGG-CACGGCCuaaGCGGU--CGC-CACCG- -5'
26904 3' -59.6 NC_005809.1 + 29559 0.66 0.439858
Target:  5'- cGCCGUGCuCGGGguaUCGCgucaGGUcGGCc -3'
miRNA:   3'- -CGGCACG-GCCUa--AGCGgucgCCA-CCG- -5'
26904 3' -59.6 NC_005809.1 + 23691 0.66 0.437948
Target:  5'- gGCCGgacacguacagGCCGGuagcgcccaggUCGCgGGCcagugccucGGUGGCg -3'
miRNA:   3'- -CGGCa----------CGGCCua---------AGCGgUCG---------CCACCG- -5'
26904 3' -59.6 NC_005809.1 + 40540 0.66 0.430356
Target:  5'- cGCCGUGUucuaucgccugCGcGAcUUCGCCAGCGaGcgccugGGCc -3'
miRNA:   3'- -CGGCACG-----------GC-CU-AAGCGGUCGC-Ca-----CCG- -5'
26904 3' -59.6 NC_005809.1 + 41894 0.66 0.430356
Target:  5'- cCCG-GCCGGcgcCGCCguaGGCgccuGGUGGCu -3'
miRNA:   3'- cGGCaCGGCCuaaGCGG---UCG----CCACCG- -5'
26904 3' -59.6 NC_005809.1 + 7418 0.66 0.430356
Target:  5'- aGCCGggcaCCGGAUggccgGCCAGCaGUucGGCu -3'
miRNA:   3'- -CGGCac--GGCCUAag---CGGUCGcCA--CCG- -5'
26904 3' -59.6 NC_005809.1 + 7256 0.66 0.430356
Target:  5'- gGCCGaugucGCCGGccUUGUgcagcuucuCGGCGGUGGUc -3'
miRNA:   3'- -CGGCa----CGGCCuaAGCG---------GUCGCCACCG- -5'
26904 3' -59.6 NC_005809.1 + 16425 0.66 0.430356
Target:  5'- gGCC--GCgGGGUaaUCGCCGGCGGcguugaacacGGCg -3'
miRNA:   3'- -CGGcaCGgCCUA--AGCGGUCGCCa---------CCG- -5'
26904 3' -59.6 NC_005809.1 + 12830 0.66 0.411722
Target:  5'- aGCCGagGCCGaGUUCuaCGGC-GUGGCc -3'
miRNA:   3'- -CGGCa-CGGCcUAAGcgGUCGcCACCG- -5'
26904 3' -59.6 NC_005809.1 + 36938 0.66 0.411722
Target:  5'- cGCCGUGUaCGGccaccUCGCCAacaucgacGCcGUGGCu -3'
miRNA:   3'- -CGGCACG-GCCua---AGCGGU--------CGcCACCG- -5'
26904 3' -59.6 NC_005809.1 + 26250 0.66 0.402593
Target:  5'- cGCCGaagGCaCGGGcaccCGCCGGCcuGGUcGGCu -3'
miRNA:   3'- -CGGCa--CG-GCCUaa--GCGGUCG--CCA-CCG- -5'
26904 3' -59.6 NC_005809.1 + 36108 0.66 0.401688
Target:  5'- cGgCGUGCaguuccugcgcgaCGGcgacgccUUCGCgGGCGGUGGUg -3'
miRNA:   3'- -CgGCACG-------------GCCu------AAGCGgUCGCCACCG- -5'
26904 3' -59.6 NC_005809.1 + 21573 0.67 0.384728
Target:  5'- cUCGUGCCGc--UCgGCCAcuuCGGUGGCg -3'
miRNA:   3'- cGGCACGGCcuaAG-CGGUc--GCCACCG- -5'
26904 3' -59.6 NC_005809.1 + 17477 0.67 0.384728
Target:  5'- cGCUGUaucccacggcGCCGGGcgCGCUGcGCugGGUGGCg -3'
miRNA:   3'- -CGGCA----------CGGCCUaaGCGGU-CG--CCACCG- -5'
26904 3' -59.6 NC_005809.1 + 10004 0.67 0.384728
Target:  5'- gGCgGUGUccugauacguCGGAgcggcaUCGCCGGCGGcagcauccUGGCc -3'
miRNA:   3'- -CGgCACG----------GCCUa-----AGCGGUCGCC--------ACCG- -5'
26904 3' -59.6 NC_005809.1 + 22573 0.67 0.384728
Target:  5'- uGuuGUGCCGcuucUCGCC-GCGGUuGCg -3'
miRNA:   3'- -CggCACGGCcua-AGCGGuCGCCAcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.