miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26904 5' -58.2 NC_005809.1 + 9660 0.66 0.417457
Target:  5'- -aGCCAGCcGUgcaGGCCGUgGCCGcAGUUc -3'
miRNA:   3'- aaCGGUCGcCA---CCGGCA-CGGCaUUAA- -5'
26904 5' -58.2 NC_005809.1 + 18470 0.66 0.417457
Target:  5'- -cGCCGGCGGcgucGGCCGauucguccaCCGUGAUg -3'
miRNA:   3'- aaCGGUCGCCa---CCGGCac-------GGCAUUAa -5'
26904 5' -58.2 NC_005809.1 + 3740 0.66 0.417457
Target:  5'- -cGCCGGUGGUGGgCacgucgGUGCCGc---- -3'
miRNA:   3'- aaCGGUCGCCACCgG------CACGGCauuaa -5'
26904 5' -58.2 NC_005809.1 + 5810 0.66 0.398381
Target:  5'- -cGCCAGCGGauagucgGGCauggCGUGCCGc---- -3'
miRNA:   3'- aaCGGUCGCCa------CCG----GCACGGCauuaa -5'
26904 5' -58.2 NC_005809.1 + 16321 0.67 0.361951
Target:  5'- -gGCCGGCgGGUGcCCGUGCCu----- -3'
miRNA:   3'- aaCGGUCG-CCACcGGCACGGcauuaa -5'
26904 5' -58.2 NC_005809.1 + 4450 0.68 0.319767
Target:  5'- -cGCCAGCGGUGGCa---CCGUcAUg -3'
miRNA:   3'- aaCGGUCGCCACCGgcacGGCAuUAa -5'
26904 5' -58.2 NC_005809.1 + 19345 0.68 0.311786
Target:  5'- -gGCgCGGuCGGUGGCCGagGCCGa---- -3'
miRNA:   3'- aaCG-GUC-GCCACCGGCa-CGGCauuaa -5'
26904 5' -58.2 NC_005809.1 + 19489 0.68 0.303957
Target:  5'- gUGCCGGUGGgcaGGCCGcUGCgaacCGUGGUc -3'
miRNA:   3'- aACGGUCGCCa--CCGGC-ACG----GCAUUAa -5'
26904 5' -58.2 NC_005809.1 + 41258 0.68 0.303957
Target:  5'- cUUGUCGGCcuGGUGGCCGUcGCCcUGGg- -3'
miRNA:   3'- -AACGGUCG--CCACCGGCA-CGGcAUUaa -5'
26904 5' -58.2 NC_005809.1 + 17269 0.68 0.288754
Target:  5'- -cGCCGGUGGcagGGCCG-GCCGc---- -3'
miRNA:   3'- aaCGGUCGCCa--CCGGCaCGGCauuaa -5'
26904 5' -58.2 NC_005809.1 + 29311 0.68 0.288754
Target:  5'- cUUGCCcagcacuucaaGGCGGUGGCgGUcGCCGg---- -3'
miRNA:   3'- -AACGG-----------UCGCCACCGgCA-CGGCauuaa -5'
26904 5' -58.2 NC_005809.1 + 4274 0.68 0.288754
Target:  5'- -cGCCGGCauGGUgauGGCCGUGUCGgcGg- -3'
miRNA:   3'- aaCGGUCG--CCA---CCGGCACGGCauUaa -5'
26904 5' -58.2 NC_005809.1 + 11173 0.69 0.28138
Target:  5'- gUUGCguGCGcUGGUCG-GCCGUGGUg -3'
miRNA:   3'- -AACGguCGCcACCGGCaCGGCAUUAa -5'
26904 5' -58.2 NC_005809.1 + 8509 0.7 0.240252
Target:  5'- aUGCagauGCGGgugGGCCGUGgCGUAGg- -3'
miRNA:   3'- aACGgu--CGCCa--CCGGCACgGCAUUaa -5'
26904 5' -58.2 NC_005809.1 + 18366 0.71 0.177934
Target:  5'- uUUGCCGGCGGcgagguUGGCCuUGCCGa---- -3'
miRNA:   3'- -AACGGUCGCC------ACCGGcACGGCauuaa -5'
26904 5' -58.2 NC_005809.1 + 35694 0.72 0.159085
Target:  5'- aUGCCAGCagauGGUGGaCGUGCCGa---- -3'
miRNA:   3'- aACGGUCG----CCACCgGCACGGCauuaa -5'
26904 5' -58.2 NC_005809.1 + 16519 0.72 0.154662
Target:  5'- gUGCCGGUGGUcuGGCCGauauaGCCGUAc-- -3'
miRNA:   3'- aACGGUCGCCA--CCGGCa----CGGCAUuaa -5'
26904 5' -58.2 NC_005809.1 + 14029 0.73 0.134182
Target:  5'- -gGCCGGCGGccgcaaGGUCGUGCCGUu--- -3'
miRNA:   3'- aaCGGUCGCCa-----CCGGCACGGCAuuaa -5'
26904 5' -58.2 NC_005809.1 + 8974 0.81 0.034427
Target:  5'- nUGCCAGC-GUGGCCGUGCCGcGAUn -3'
miRNA:   3'- aACGGUCGcCACCGGCACGGCaUUAa -5'
26904 5' -58.2 NC_005809.1 + 9382 0.92 0.005195
Target:  5'- -cGCCAGCGGUGGCCGUGCCGa---- -3'
miRNA:   3'- aaCGGUCGCCACCGGCACGGCauuaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.