Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26905 | 5' | -55.9 | NC_005809.1 | + | 16743 | 0.67 | 0.56246 |
Target: 5'- cGAcgugGCgGUCacgCUCGUgGGCGUAGCCa -3' miRNA: 3'- aCUa---UGgCAG---GAGCGgCUGCAUCGGg -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 25426 | 0.69 | 0.438132 |
Target: 5'- aUGAUuuCCGUCaugCGCUGcACGaAGCCCu -3' miRNA: 3'- -ACUAu-GGCAGga-GCGGC-UGCaUCGGG- -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 3758 | 0.69 | 0.457828 |
Target: 5'- cGGUGCCG-CC--GCUgGACGUAGCCUc -3' miRNA: 3'- aCUAUGGCaGGagCGG-CUGCAUCGGG- -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 18367 | 0.69 | 0.463829 |
Target: 5'- --uUGCCGgcggcgagguuggCCUUGCCGAUGgcGCCg -3' miRNA: 3'- acuAUGGCa------------GGAGCGGCUGCauCGGg -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 8512 | 0.68 | 0.488231 |
Target: 5'- cGAUGCCcuugaUgUCGCCGGCGaacuuGCCCa -3' miRNA: 3'- aCUAUGGca---GgAGCGGCUGCau---CGGG- -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 11498 | 0.68 | 0.506921 |
Target: 5'- cGAcACCGcaaagggcagcgCCUgCGCUGGCGUgaGGCCCu -3' miRNA: 3'- aCUaUGGCa-----------GGA-GCGGCUGCA--UCGGG- -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 4258 | 0.68 | 0.51955 |
Target: 5'- cGGUGCCGgCCgucagCGCCGGCauggugaUGGCCg -3' miRNA: 3'- aCUAUGGCaGGa----GCGGCUGc------AUCGGg -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 39735 | 0.68 | 0.530167 |
Target: 5'- cUGGUGCUGg---CGCCGcugcGCGUGGCCg -3' miRNA: 3'- -ACUAUGGCaggaGCGGC----UGCAUCGGg -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 7289 | 0.67 | 0.56246 |
Target: 5'- cGggGCCGUagugCUCGCgGAUGgcGCCg -3' miRNA: 3'- aCuaUGGCAg---GAGCGgCUGCauCGGg -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 12640 | 0.7 | 0.400248 |
Target: 5'- cUGcUGCCGUCCUuuggCGUCGGguCGUcGCCCa -3' miRNA: 3'- -ACuAUGGCAGGA----GCGGCU--GCAuCGGG- -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 24246 | 0.7 | 0.399328 |
Target: 5'- cGAUGauGUCCUCGCgGcuugccaccuugaGCGUGGCgCCg -3' miRNA: 3'- aCUAUggCAGGAGCGgC-------------UGCAUCG-GG- -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 37700 | 0.71 | 0.364521 |
Target: 5'- aUGAUugCGUggCUCGCCGGCGaggauuggaagcUGGCCg -3' miRNA: 3'- -ACUAugGCAg-GAGCGGCUGC------------AUCGGg -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 37132 | 0.75 | 0.203278 |
Target: 5'- cGAUACCGaCCUCGCCcACGccGCCa -3' miRNA: 3'- aCUAUGGCaGGAGCGGcUGCauCGGg -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 32563 | 0.75 | 0.203822 |
Target: 5'- cGAUGCCGcUCCgacguaucaggacacCGCCGACGcugugaccaagcUGGCCCg -3' miRNA: 3'- aCUAUGGC-AGGa--------------GCGGCUGC------------AUCGGG- -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 28666 | 0.74 | 0.214407 |
Target: 5'- cGGUGCCGgcggCCUCGCCagcGCGgcGCgCCa -3' miRNA: 3'- aCUAUGGCa---GGAGCGGc--UGCauCG-GG- -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 2203 | 0.74 | 0.232076 |
Target: 5'- gGAUGCCGacgcCCUCGUCGG-GUAGCaCCa -3' miRNA: 3'- aCUAUGGCa---GGAGCGGCUgCAUCG-GG- -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 8041 | 0.73 | 0.278078 |
Target: 5'- ---cGCCGUCCUUGCCGcCGUccaugacgcgcGCCCa -3' miRNA: 3'- acuaUGGCAGGAGCGGCuGCAu----------CGGG- -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 16517 | 0.72 | 0.315198 |
Target: 5'- aGGUGCCGguggUCUgGCCGAUaUAGCCg -3' miRNA: 3'- aCUAUGGCa---GGAgCGGCUGcAUCGGg -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 13523 | 0.71 | 0.33106 |
Target: 5'- cGGUuuGCCGUCCgCGCCGAacUGUcGGCCg -3' miRNA: 3'- aCUA--UGGCAGGaGCGGCU--GCA-UCGGg -5' |
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26905 | 5' | -55.9 | NC_005809.1 | + | 19064 | 0.71 | 0.364521 |
Target: 5'- cGAUcaGCgUGUCCUCGCCGAgGUcacgcgauugcaGGCCg -3' miRNA: 3'- aCUA--UG-GCAGGAGCGGCUgCA------------UCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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