Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26906 | 3' | -54.7 | NC_005809.1 | + | 8240 | 1.12 | 0.000568 |
Target: 5'- gCCCUCGUCGGCGAAGUCGCUGGAAUCa -3' miRNA: 3'- -GGGAGCAGCCGCUUCAGCGACCUUAG- -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 5748 | 0.73 | 0.318884 |
Target: 5'- -gUUUGUCGGCG-AGUUGCUGGAu-- -3' miRNA: 3'- ggGAGCAGCCGCuUCAGCGACCUuag -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 19259 | 0.72 | 0.369096 |
Target: 5'- aCUUC-UCGGCGucGaUGCUGGAAUCg -3' miRNA: 3'- gGGAGcAGCCGCuuCaGCGACCUUAG- -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 10741 | 0.71 | 0.396157 |
Target: 5'- uUCUUCGUCGGUGAGGgugCGCaGGu-UCa -3' miRNA: 3'- -GGGAGCAGCCGCUUCa--GCGaCCuuAG- -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 4612 | 0.7 | 0.443992 |
Target: 5'- gCCUCGgcgaugaugUCGGCGggGaUGCUGGGccacgcugcGUCg -3' miRNA: 3'- gGGAGC---------AGCCGCuuCaGCGACCU---------UAG- -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 28880 | 0.7 | 0.474202 |
Target: 5'- gUCCUCGcugcUGGCGuAGUUGCUGGccGUCg -3' miRNA: 3'- -GGGAGCa---GCCGCuUCAGCGACCu-UAG- -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 1189 | 0.69 | 0.526694 |
Target: 5'- gCCgggGUCGGCcGGGUUGUUGGAAUa -3' miRNA: 3'- gGGag-CAGCCGcUUCAGCGACCUUAg -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 18409 | 0.69 | 0.526694 |
Target: 5'- gCCaCGUCGGCGAAGguggCGUUGuccgccGAGUCc -3' miRNA: 3'- gGGaGCAGCCGCUUCa---GCGAC------CUUAG- -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 20455 | 0.68 | 0.576799 |
Target: 5'- gCCCUCGuuccgguucccuUCGGCGAAGgccauagccaucgCGUUGGuGUUg -3' miRNA: 3'- -GGGAGC------------AGCCGCUUCa------------GCGACCuUAG- -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 23208 | 0.68 | 0.590065 |
Target: 5'- gCCUCGUCGGUGAAuucggccucggccucGgccaccgaccgcgccUCGCUGGGGa- -3' miRNA: 3'- gGGAGCAGCCGCUU---------------C---------------AGCGACCUUag -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 2018 | 0.67 | 0.625652 |
Target: 5'- gCgCUCGcUGGCGAAGUCGCgcaGGcGAUa -3' miRNA: 3'- -GgGAGCaGCCGCUUCAGCGa--CC-UUAg -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 20606 | 0.67 | 0.647944 |
Target: 5'- uCCUUCGccaGGCGgcGUCGCaGGucgguGUCg -3' miRNA: 3'- -GGGAGCag-CCGCuuCAGCGaCCu----UAG- -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 8160 | 0.67 | 0.659073 |
Target: 5'- aCCUCGaugaugCGGCccagGAAGgCGCUGGcGUCc -3' miRNA: 3'- gGGAGCa-----GCCG----CUUCaGCGACCuUAG- -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 8625 | 0.66 | 0.670177 |
Target: 5'- uUCUCGgccgcugcggUGGCGAGGUCGCcGGccuUCa -3' miRNA: 3'- gGGAGCa---------GCCGCUUCAGCGaCCuu-AG- -5' |
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26906 | 3' | -54.7 | NC_005809.1 | + | 38700 | 0.66 | 0.692262 |
Target: 5'- aCCUCGUCGaGCGcgucAGGaaGCUGGGc-- -3' miRNA: 3'- gGGAGCAGC-CGC----UUCagCGACCUuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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