Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 10930 | 0.77 | 0.044116 |
Target: 5'- cCGGUUUgCAGGGCCucgggcaguuGCGCggcgacaGCCGGGGa -3' miRNA: 3'- -GCCGAAgGUCCCGG----------UGCGa------CGGCCCC- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 37870 | 0.66 | 0.286973 |
Target: 5'- gGGCUaCgAGGGCgGCGUcggUGCCuuucucaccGGGGc -3' miRNA: 3'- gCCGAaGgUCCCGgUGCG---ACGG---------CCCC- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 25746 | 0.66 | 0.280098 |
Target: 5'- gCGGCagCacgcuGGG-CGCGCUGCUGGGcGg -3' miRNA: 3'- -GCCGaaGgu---CCCgGUGCGACGGCCC-C- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 678 | 0.66 | 0.280098 |
Target: 5'- aGGCcgCCuacGGCgGCGCcgGCCGGGc -3' miRNA: 3'- gCCGaaGGuc-CCGgUGCGa-CGGCCCc -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 11584 | 0.66 | 0.266743 |
Target: 5'- -uGCcgcCCAGGGCCGCcgGCUggccGCCGGGc -3' miRNA: 3'- gcCGaa-GGUCCCGGUG--CGA----CGGCCCc -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 4611 | 0.66 | 0.266743 |
Target: 5'- aGGUcagCCAGgccaauguuGGcCCGCGCUGCCGcaGGGu -3' miRNA: 3'- gCCGaa-GGUC---------CC-GGUGCGACGGC--CCC- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 1461 | 0.67 | 0.218435 |
Target: 5'- aCGGCgcggUCGGcGGCcucCugGCagGCCGGGGu -3' miRNA: 3'- -GCCGaa--GGUC-CCG---GugCGa-CGGCCCC- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 24649 | 0.68 | 0.212951 |
Target: 5'- cCGGCgggCCAGGaugguguuGUCGCGCccGCCGcGGGc -3' miRNA: 3'- -GCCGaa-GGUCC--------CGGUGCGa-CGGC-CCC- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 27502 | 0.68 | 0.202339 |
Target: 5'- cCGGCggCCucGGCCgccagcuucucgGCGCgGUCGGGGu -3' miRNA: 3'- -GCCGaaGGucCCGG------------UGCGaCGGCCCC- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 24575 | 0.68 | 0.202339 |
Target: 5'- aGGCcggCCAcggucGGGCCguccgGCGUguccuUGCCGGGGu -3' miRNA: 3'- gCCGaa-GGU-----CCCGG-----UGCG-----ACGGCCCC- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 36226 | 0.7 | 0.147903 |
Target: 5'- cCGGCcUUC-GGGCCggGCGCUuugGCUGGGGc -3' miRNA: 3'- -GCCGaAGGuCCCGG--UGCGA---CGGCCCC- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 14890 | 0.71 | 0.126337 |
Target: 5'- cCGGCUUUCAGGGUCuGCGCggcgaucugcugcugGCCGGc- -3' miRNA: 3'- -GCCGAAGGUCCCGG-UGCGa--------------CGGCCcc -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 29016 | 0.71 | 0.125998 |
Target: 5'- aGGCgaCCAGGcGCCGCGCUucgGCCaGGu -3' miRNA: 3'- gCCGaaGGUCC-CGGUGCGA---CGGcCCc -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 180 | 0.71 | 0.110081 |
Target: 5'- cCGGUgucgCUGGGcaccGUCACGCUGCCGGGc -3' miRNA: 3'- -GCCGaa--GGUCC----CGGUGCGACGGCCCc -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 17033 | 0.69 | 0.160112 |
Target: 5'- uCGGCUa-CGGGG--GCGCUGCCGGcGGc -3' miRNA: 3'- -GCCGAagGUCCCggUGCGACGGCC-CC- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 35394 | 0.69 | 0.155945 |
Target: 5'- cCGGCUgcgUCAGGGCgucaGCGCgucggGCCuGGGc -3' miRNA: 3'- -GCCGAa--GGUCCCGg---UGCGa----CGGcCCC- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 10195 | 0.7 | 0.147903 |
Target: 5'- uGGCUUCCu--GCUggGCgGCCGGGGc -3' miRNA: 3'- gCCGAAGGuccCGGugCGaCGGCCCC- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 8305 | 0.71 | 0.125998 |
Target: 5'- aGuGCagCCAGcGGUgCGCGCUGCuCGGGGa -3' miRNA: 3'- gC-CGaaGGUC-CCG-GUGCGACG-GCCCC- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 11334 | 0.78 | 0.037252 |
Target: 5'- cCGGCUcguagCU-GGGCCGCGC-GCCGGGGu -3' miRNA: 3'- -GCCGAa----GGuCCCGGUGCGaCGGCCCC- -5' |
|||||||
26906 | 5' | -63.5 | NC_005809.1 | + | 14167 | 0.66 | 0.273355 |
Target: 5'- aGGCaUCUAcuGGcGCCGCGCcGCCGGc- -3' miRNA: 3'- gCCGaAGGU--CC-CGGUGCGaCGGCCcc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home