Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 26906 | 5' | -63.5 | NC_005809.1 | + | 10195 | 0.7 | 0.147903 |
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Target: 5'- uGGCUUCCu--GCUggGCgGCCGGGGc -3' miRNA: 3'- gCCGAAGGuccCGGugCGaCGGCCCC- -5' |
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| 26906 | 5' | -63.5 | NC_005809.1 | + | 36226 | 0.7 | 0.147903 |
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Target: 5'- cCGGCcUUC-GGGCCggGCGCUuugGCUGGGGc -3' miRNA: 3'- -GCCGaAGGuCCCGG--UGCGA---CGGCCCC- -5' |
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| 26906 | 5' | -63.5 | NC_005809.1 | + | 14890 | 0.71 | 0.126337 |
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Target: 5'- cCGGCUUUCAGGGUCuGCGCggcgaucugcugcugGCCGGc- -3' miRNA: 3'- -GCCGAAGGUCCCGG-UGCGa--------------CGGCCcc -5' |
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| 26906 | 5' | -63.5 | NC_005809.1 | + | 8305 | 0.71 | 0.125998 |
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Target: 5'- aGuGCagCCAGcGGUgCGCGCUGCuCGGGGa -3' miRNA: 3'- gC-CGaaGGUC-CCG-GUGCGACG-GCCCC- -5' |
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| 26906 | 5' | -63.5 | NC_005809.1 | + | 29016 | 0.71 | 0.125998 |
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Target: 5'- aGGCgaCCAGGcGCCGCGCUucgGCCaGGu -3' miRNA: 3'- gCCGaaGGUCC-CGGUGCGA---CGGcCCc -5' |
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| 26906 | 5' | -63.5 | NC_005809.1 | + | 180 | 0.71 | 0.110081 |
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Target: 5'- cCGGUgucgCUGGGcaccGUCACGCUGCCGGGc -3' miRNA: 3'- -GCCGaa--GGUCC----CGGUGCGACGGCCCc -5' |
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| 26906 | 5' | -63.5 | NC_005809.1 | + | 10930 | 0.77 | 0.044116 |
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Target: 5'- cCGGUUUgCAGGGCCucgggcaguuGCGCggcgacaGCCGGGGa -3' miRNA: 3'- -GCCGAAgGUCCCGG----------UGCGa------CGGCCCC- -5' |
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| 26906 | 5' | -63.5 | NC_005809.1 | + | 11334 | 0.78 | 0.037252 |
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Target: 5'- cCGGCUcguagCU-GGGCCGCGC-GCCGGGGu -3' miRNA: 3'- -GCCGAa----GGuCCCGGUGCGaCGGCCCC- -5' |
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| 26906 | 5' | -63.5 | NC_005809.1 | + | 8277 | 1.08 | 0.000139 |
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Target: 5'- uCGGCUUCCAGGGCCACGCUGCCGGGGc -3' miRNA: 3'- -GCCGAAGGUCCCGGUGCGACGGCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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