miRNA display CGI


Results 21 - 40 of 152 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26907 3' -60 NC_005809.1 + 21017 0.67 0.375994
Target:  5'- uGCCGGCUuccuucggGGUcaucuucauguuGGUgagCGGCaugUCGGCCu -3'
miRNA:   3'- cCGGCCGG--------UCG------------UCAa--GCCGa--AGCCGG- -5'
26907 3' -60 NC_005809.1 + 36227 0.67 0.375994
Target:  5'- cGGCCuucgGGCCgGGCGcUUUGGCUggGGCg -3'
miRNA:   3'- -CCGG----CCGG-UCGUcAAGCCGAagCCGg -5'
26907 3' -60 NC_005809.1 + 41548 0.67 0.367394
Target:  5'- cGCCGGCCguggccuuccAGguGUUCGacGCUgCGGUg -3'
miRNA:   3'- cCGGCCGG----------UCguCAAGC--CGAaGCCGg -5'
26907 3' -60 NC_005809.1 + 5266 0.67 0.367394
Target:  5'- -aCCGGCCAccguGUugauGUucgCGGCguugUCGGCCa -3'
miRNA:   3'- ccGGCCGGU----CGu---CAa--GCCGa---AGCCGG- -5'
26907 3' -60 NC_005809.1 + 11124 0.67 0.367394
Target:  5'- uGGUucaaaCGuGCgAGCAGUUCGGCcugcugcUgGGCCg -3'
miRNA:   3'- -CCG-----GC-CGgUCGUCAAGCCGa------AgCCGG- -5'
26907 3' -60 NC_005809.1 + 31597 0.67 0.367394
Target:  5'- cGGCCuGGCCGaacagguggccGCAGUgucccCGGCUgucGCCg -3'
miRNA:   3'- -CCGG-CCGGU-----------CGUCAa----GCCGAagcCGG- -5'
26907 3' -60 NC_005809.1 + 15604 0.67 0.367394
Target:  5'- cGUCGGUCGGC--UUCGGUgUUGGCUu -3'
miRNA:   3'- cCGGCCGGUCGucAAGCCGaAGCCGG- -5'
26907 3' -60 NC_005809.1 + 21667 0.67 0.364841
Target:  5'- aGGCUGggcaucgacacguuGCCGGCAG-UCGGUUccgUGGUCg -3'
miRNA:   3'- -CCGGC--------------CGGUCGUCaAGCCGAa--GCCGG- -5'
26907 3' -60 NC_005809.1 + 25592 0.67 0.358932
Target:  5'- cGGUcugCGGCCcaGGCAGUggcaaccaCGGCggcgCGGUCg -3'
miRNA:   3'- -CCG---GCCGG--UCGUCAa-------GCCGaa--GCCGG- -5'
26907 3' -60 NC_005809.1 + 24185 0.67 0.358932
Target:  5'- uGGCCGccaCCGGCGccaUCGGCaa-GGCCa -3'
miRNA:   3'- -CCGGCc--GGUCGUca-AGCCGaagCCGG- -5'
26907 3' -60 NC_005809.1 + 9079 0.67 0.358093
Target:  5'- uGGCCGugccguaauuGCCAGCGGUggccgugccggauUCGccaGCggUGGCCg -3'
miRNA:   3'- -CCGGC----------CGGUCGUCA-------------AGC---CGaaGCCGG- -5'
26907 3' -60 NC_005809.1 + 9343 0.67 0.358093
Target:  5'- uGGCCGugccggauucGCCAGCGGUggccgugccggauUCGccaGCggUGGCCg -3'
miRNA:   3'- -CCGGC----------CGGUCGUCA-------------AGC---CGaaGCCGG- -5'
26907 3' -60 NC_005809.1 + 9271 0.67 0.358093
Target:  5'- uGGCCGugccgcgauaGCCAGCGGUggccgugccggauUCGccaGCggUGGCCg -3'
miRNA:   3'- -CCGGC----------CGGUCGUCA-------------AGC---CGaaGCCGG- -5'
26907 3' -60 NC_005809.1 + 9175 0.67 0.358093
Target:  5'- uGGCCGugccguaauuGCCAGCGGUggccgugccggauUCGccaGCggUGGCCg -3'
miRNA:   3'- -CCGGC----------CGGUCGUCA-------------AGC---CGaaGCCGG- -5'
26907 3' -60 NC_005809.1 + 8983 0.67 0.358093
Target:  5'- uGGCCGugccgcgauaGCCAGCGGUggccgugccggauUCGccaGCggUGGCCg -3'
miRNA:   3'- -CCGGC----------CGGUCGUCA-------------AGC---CGaaGCCGG- -5'
26907 3' -60 NC_005809.1 + 4801 0.67 0.350606
Target:  5'- cGCCGGCUGGCGcugCGGgaUugcUGGCCg -3'
miRNA:   3'- cCGGCCGGUCGUcaaGCCgaA---GCCGG- -5'
26907 3' -60 NC_005809.1 + 24647 0.67 0.350606
Target:  5'- uGCCGGCgGGcCAGgaUGGUguugUCGcGCCc -3'
miRNA:   3'- cCGGCCGgUC-GUCaaGCCGa---AGC-CGG- -5'
26907 3' -60 NC_005809.1 + 2248 0.67 0.350606
Target:  5'- gGGCCuuGGCCGGCAGUUCGa---CGcGCa -3'
miRNA:   3'- -CCGG--CCGGUCGUCAAGCcgaaGC-CGg -5'
26907 3' -60 NC_005809.1 + 32913 0.67 0.350606
Target:  5'- cGGCCuuuuCCAGCGGUUCcGCcgUGGCUg -3'
miRNA:   3'- -CCGGcc--GGUCGUCAAGcCGaaGCCGG- -5'
26907 3' -60 NC_005809.1 + 11481 0.67 0.350606
Target:  5'- cGCCGGCCuGCaccgaGGUgagcagCGGCaccaGGCCc -3'
miRNA:   3'- cCGGCCGGuCG-----UCAa-----GCCGaag-CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.