Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26907 | 5' | -57.6 | NC_005809.1 | + | 7467 | 1.07 | 0.000491 |
Target: 5'- aAUGGCCUUGCACCAGGACUCGACCAGa -3' miRNA: 3'- -UACCGGAACGUGGUCCUGAGCUGGUC- -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 29368 | 0.78 | 0.070228 |
Target: 5'- gGUGGCCUUGCcCCAgcccucGGACUCGGCgCGGu -3' miRNA: 3'- -UACCGGAACGuGGU------CCUGAGCUG-GUC- -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 5759 | 0.73 | 0.170812 |
Target: 5'- -gGGCagcgagUGCGCCAGGGCcUUGACCAu -3' miRNA: 3'- uaCCGga----ACGUGGUCCUG-AGCUGGUc -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 1666 | 0.71 | 0.230422 |
Target: 5'- -aGGUCUUGCACCucgcgcuuGGACUCGcggcgaGCCAu -3' miRNA: 3'- uaCCGGAACGUGGu-------CCUGAGC------UGGUc -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 11267 | 0.71 | 0.230422 |
Target: 5'- uUGcGCUgcgGCGCUGGGacGCUCGGCCAGg -3' miRNA: 3'- uAC-CGGaa-CGUGGUCC--UGAGCUGGUC- -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 6287 | 0.7 | 0.262898 |
Target: 5'- uUGGCUgggGCGCCGGGGCUUaucuCCGGu -3' miRNA: 3'- uACCGGaa-CGUGGUCCUGAGcu--GGUC- -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 26853 | 0.69 | 0.322437 |
Target: 5'- cAUGGCCUcGCGCCAG--UUCGAugcCCAGg -3' miRNA: 3'- -UACCGGAaCGUGGUCcuGAGCU---GGUC- -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 15124 | 0.69 | 0.322437 |
Target: 5'- cUGGCauaccaGCGCCAGGGCcugCGGCCGc -3' miRNA: 3'- uACCGgaa---CGUGGUCCUGa--GCUGGUc -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 17104 | 0.69 | 0.330551 |
Target: 5'- -cGGCCggGCcUUGGGGCUUGACCAc -3' miRNA: 3'- uaCCGGaaCGuGGUCCUGAGCUGGUc -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 25312 | 0.69 | 0.330551 |
Target: 5'- -cGGCCcUGcCACCGGcGCUCGucGCCGGg -3' miRNA: 3'- uaCCGGaAC-GUGGUCcUGAGC--UGGUC- -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 18461 | 0.68 | 0.338813 |
Target: 5'- -cGGUCgcgGCGCCGGcGGCgUCGGCCGa -3' miRNA: 3'- uaCCGGaa-CGUGGUC-CUG-AGCUGGUc -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 27700 | 0.68 | 0.338813 |
Target: 5'- -aGGCCgcGCGCCGGcagcGGCUCGccGCCGGu -3' miRNA: 3'- uaCCGGaaCGUGGUC----CUGAGC--UGGUC- -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 13994 | 0.68 | 0.347225 |
Target: 5'- cUGGCCUcgUGCugCAcaGCUUGACCAc -3' miRNA: 3'- uACCGGA--ACGugGUccUGAGCUGGUc -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 12544 | 0.68 | 0.373345 |
Target: 5'- cGUGGUgUgggGCACCaAGGGCgCGGCCGu -3' miRNA: 3'- -UACCGgAa--CGUGG-UCCUGaGCUGGUc -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 4576 | 0.67 | 0.391485 |
Target: 5'- -aGGCgCUgcucggUGCGCCAGGcgaggaacuGCUCGGCCu- -3' miRNA: 3'- uaCCG-GA------ACGUGGUCC---------UGAGCUGGuc -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 24485 | 0.67 | 0.391485 |
Target: 5'- uUGGCC-UGCGCCAGGAagUCGuagggGCUGGc -3' miRNA: 3'- uACCGGaACGUGGUCCUg-AGC-----UGGUC- -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 11016 | 0.67 | 0.407349 |
Target: 5'- uUGGCgUcgaugaacaccugcUGCACCGGGccguuCUCGGCCGc -3' miRNA: 3'- uACCGgA--------------ACGUGGUCCu----GAGCUGGUc -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 40610 | 0.66 | 0.448212 |
Target: 5'- -cGuGCCUUcCcCCAGGgccgcgcGCUCGACCAGa -3' miRNA: 3'- uaC-CGGAAcGuGGUCC-------UGAGCUGGUC- -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 13222 | 0.66 | 0.449213 |
Target: 5'- -aGGCCaccgGCGCgugguucgAGGACUUGGCCGGc -3' miRNA: 3'- uaCCGGaa--CGUGg-------UCCUGAGCUGGUC- -5' |
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26907 | 5' | -57.6 | NC_005809.1 | + | 40807 | 0.66 | 0.459286 |
Target: 5'- -cGGCCcgacGCGCCAGG-CgcaGGCCGGc -3' miRNA: 3'- uaCCGGaa--CGUGGUCCuGag-CUGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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