miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26908 3' -60.2 NC_005809.1 + 33271 0.68 0.260195
Target:  5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3'
miRNA:   3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5'
26908 3' -60.2 NC_005809.1 + 33319 0.68 0.260195
Target:  5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3'
miRNA:   3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5'
26908 3' -60.2 NC_005809.1 + 33199 0.68 0.260195
Target:  5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3'
miRNA:   3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5'
26908 3' -60.2 NC_005809.1 + 33367 0.68 0.260195
Target:  5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3'
miRNA:   3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5'
26908 3' -60.2 NC_005809.1 + 33415 0.68 0.260195
Target:  5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3'
miRNA:   3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5'
26908 3' -60.2 NC_005809.1 + 33463 0.68 0.260195
Target:  5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3'
miRNA:   3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5'
26908 3' -60.2 NC_005809.1 + 33559 0.68 0.260195
Target:  5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3'
miRNA:   3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5'
26908 3' -60.2 NC_005809.1 + 11133 0.68 0.253579
Target:  5'- cGAUGaCCaCGCCGCAGAUCGU--GGCGUc -3'
miRNA:   3'- -UUGC-GG-GUGGCGUCUAGCAggCCGUA- -5'
26908 3' -60.2 NC_005809.1 + 400 0.69 0.23456
Target:  5'- gGGCGCCCACCaGCAgcacggcgguGAUCGU-CGGCc- -3'
miRNA:   3'- -UUGCGGGUGG-CGU----------CUAGCAgGCCGua -5'
26908 3' -60.2 NC_005809.1 + 30891 0.69 0.230902
Target:  5'- --aGUCCGCCGCAGucugacaccuugggcAgugguguuUCGUCCGGCGUa -3'
miRNA:   3'- uugCGGGUGGCGUC---------------U--------AGCAGGCCGUA- -5'
26908 3' -60.2 NC_005809.1 + 27975 0.69 0.216753
Target:  5'- cGACGCaCUGCUgaaaaGCGGAUCGgccgCCGGCAUc -3'
miRNA:   3'- -UUGCG-GGUGG-----CGUCUAGCa---GGCCGUA- -5'
26908 3' -60.2 NC_005809.1 + 20438 0.7 0.200116
Target:  5'- uGCGCCaguaGCCGCAGGcccUCGuUCCGGUu- -3'
miRNA:   3'- uUGCGGg---UGGCGUCU---AGC-AGGCCGua -5'
26908 3' -60.2 NC_005809.1 + 34803 0.71 0.170158
Target:  5'- gGACGCCgGC-GCAGAUCGcgCCGGUg- -3'
miRNA:   3'- -UUGCGGgUGgCGUCUAGCa-GGCCGua -5'
26908 3' -60.2 NC_005809.1 + 24672 0.72 0.125157
Target:  5'- cGCGCCCGCCGCGGGccaCGUCCacgcccaGGCu- -3'
miRNA:   3'- uUGCGGGUGGCGUCUa--GCAGG-------CCGua -5'
26908 3' -60.2 NC_005809.1 + 5897 1.02 0.000589
Target:  5'- cAACGCCCACCGCAGAUCGUCCGGCAUc -3'
miRNA:   3'- -UUGCGGGUGGCGUCUAGCAGGCCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.