miRNA display CGI


Results 1 - 20 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2691 5' -48.7 NC_001491.2 + 138083 0.66 0.999123
Target:  5'- uGggGGCCAAgacgaggugggGCGGGuuggcauuGCGGCGGCGa- -3'
miRNA:   3'- cCuuUUGGUU-----------UGUCC--------CGCCGUUGUac -5'
2691 5' -48.7 NC_001491.2 + 12299 0.66 0.998924
Target:  5'- aGGGGAugUuguGCAGGGCuaGGCgGugGUGg -3'
miRNA:   3'- -CCUUUugGuu-UGUCCCG--CCG-UugUAC- -5'
2691 5' -48.7 NC_001491.2 + 28356 0.66 0.998924
Target:  5'- cGGGAAGCUcuGCucGGGCaGCAGCu-- -3'
miRNA:   3'- -CCUUUUGGuuUGu-CCCGcCGUUGuac -5'
2691 5' -48.7 NC_001491.2 + 66000 0.66 0.998924
Target:  5'- ---uAACCuAAAgGGGGCGGCAgACGa- -3'
miRNA:   3'- ccuuUUGG-UUUgUCCCGCCGU-UGUac -5'
2691 5' -48.7 NC_001491.2 + 24608 0.66 0.998924
Target:  5'- gGGAAAuucCCGcccCGGGGCGGCcGCu-- -3'
miRNA:   3'- -CCUUUu--GGUuu-GUCCCGCCGuUGuac -5'
2691 5' -48.7 NC_001491.2 + 35003 0.66 0.998924
Target:  5'- gGGGAAccgcauccucACCAAGCGgucccacgccuGGGCcGGCAAC-UGg -3'
miRNA:   3'- -CCUUU----------UGGUUUGU-----------CCCG-CCGUUGuAC- -5'
2691 5' -48.7 NC_001491.2 + 65121 0.66 0.998924
Target:  5'- uGGGAAACUGu--GGGGUGGCuguuGACAUa -3'
miRNA:   3'- -CCUUUUGGUuugUCCCGCCG----UUGUAc -5'
2691 5' -48.7 NC_001491.2 + 69373 0.66 0.998924
Target:  5'- aGGAAccaaGGCCAAagccuuuaguACAaaGGCGGCAGCGg- -3'
miRNA:   3'- -CCUU----UUGGUU----------UGUc-CCGCCGUUGUac -5'
2691 5' -48.7 NC_001491.2 + 63914 0.66 0.998689
Target:  5'- uGGGAAGCCAAGaucuguggUAGGGUaGGCGcccACGUu -3'
miRNA:   3'- -CCUUUUGGUUU--------GUCCCG-CCGU---UGUAc -5'
2691 5' -48.7 NC_001491.2 + 3825 0.66 0.998689
Target:  5'- uGGcuGGCCGcGGCAGcGGCGGCcugGGCcgGg -3'
miRNA:   3'- -CCuuUUGGU-UUGUC-CCGCCG---UUGuaC- -5'
2691 5' -48.7 NC_001491.2 + 18636 0.66 0.998689
Target:  5'- uGAAAAacaCGuacCAGGGCGGUGGCAc- -3'
miRNA:   3'- cCUUUUg--GUuu-GUCCCGCCGUUGUac -5'
2691 5' -48.7 NC_001491.2 + 51013 0.66 0.998689
Target:  5'- gGGAAGAgCGucCAGGGUacgGGCGAUggGg -3'
miRNA:   3'- -CCUUUUgGUuuGUCCCG---CCGUUGuaC- -5'
2691 5' -48.7 NC_001491.2 + 88415 0.66 0.998689
Target:  5'- gGGAGuACUAGuuGgGGGGCuuGGCGugGUGg -3'
miRNA:   3'- -CCUUuUGGUU--UgUCCCG--CCGUugUAC- -5'
2691 5' -48.7 NC_001491.2 + 147161 0.66 0.99861
Target:  5'- aGGAcAACCuccguuucuucggcCAGGGCGGCgAGCGa- -3'
miRNA:   3'- -CCUuUUGGuuu-----------GUCCCGCCG-UUGUac -5'
2691 5' -48.7 NC_001491.2 + 97885 0.66 0.998085
Target:  5'- cGAGGAUguGGCcacGGCGGCAGCAg- -3'
miRNA:   3'- cCUUUUGguUUGuc-CCGCCGUUGUac -5'
2691 5' -48.7 NC_001491.2 + 2719 0.67 0.997704
Target:  5'- cGGGGAGCCugguGGCccGGGGUGGCcACc-- -3'
miRNA:   3'- -CCUUUUGGu---UUG--UCCCGCCGuUGuac -5'
2691 5' -48.7 NC_001491.2 + 42701 0.67 0.997215
Target:  5'- cGGAAAACCuGGAUcacacgccacucuGGGGUGGCA-CAg- -3'
miRNA:   3'- -CCUUUUGG-UUUG-------------UCCCGCCGUuGUac -5'
2691 5' -48.7 NC_001491.2 + 72939 0.67 0.996752
Target:  5'- cGAAuuguuGCCAGACGuucaGCGGUAGCAUGu -3'
miRNA:   3'- cCUUu----UGGUUUGUcc--CGCCGUUGUAC- -5'
2691 5' -48.7 NC_001491.2 + 23749 0.68 0.994732
Target:  5'- uGGAAAACCAGuCGGuuaGGUGGUcGCAUu -3'
miRNA:   3'- -CCUUUUGGUUuGUC---CCGCCGuUGUAc -5'
2691 5' -48.7 NC_001491.2 + 83807 0.68 0.994732
Target:  5'- -cAAAGCCGAcuuuuGCGGGGCGG-AGCGg- -3'
miRNA:   3'- ccUUUUGGUU-----UGUCCCGCCgUUGUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.