Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26911 | 5' | -54.9 | NC_005809.1 | + | 17409 | 0.66 | 0.697707 |
Target: 5'- -cCCGCCGAccacgagCGAGGgC-CGGUGGGu -3' miRNA: 3'- uuGGUGGCUua-----GCUUUgGgGCCACCC- -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 8715 | 0.66 | 0.697707 |
Target: 5'- uGCUGCCGAAcaCGAagauGugCCCGGcGGGc -3' miRNA: 3'- uUGGUGGCUUa-GCU----UugGGGCCaCCC- -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 18542 | 0.66 | 0.697707 |
Target: 5'- uGGCCugGCCGaAGUCGAucACgUCGGUGGa -3' miRNA: 3'- -UUGG--UGGC-UUAGCUu-UGgGGCCACCc -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 241 | 0.66 | 0.697707 |
Target: 5'- uGGCgCGCUGggUUu---CCCCGGUGGu -3' miRNA: 3'- -UUG-GUGGCuuAGcuuuGGGGCCACCc -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 16847 | 0.66 | 0.686693 |
Target: 5'- uGCCGCCGGugaggaCGAcGACCCCGccgcGGGg -3' miRNA: 3'- uUGGUGGCUua----GCU-UUGGGGCca--CCC- -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 16488 | 0.66 | 0.675625 |
Target: 5'- uACCACUGGAUUGAGgcccGCCCCGaGUu-- -3' miRNA: 3'- uUGGUGGCUUAGCUU----UGGGGC-CAccc -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 18939 | 0.66 | 0.663401 |
Target: 5'- cGCCGCCGGcuaccgCGAAACCaacgcacguuuuaCCGG-GGGc -3' miRNA: 3'- uUGGUGGCUua----GCUUUGG-------------GGCCaCCC- -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 871 | 0.66 | 0.652258 |
Target: 5'- uGCgaGCCGAGUUGAAcagcaggGCCagcaUGGUGGGg -3' miRNA: 3'- uUGg-UGGCUUAGCUU-------UGGg---GCCACCC- -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 5590 | 0.67 | 0.642211 |
Target: 5'- cGCCACCGuGUCGAuguccGCCUCGuUGGu -3' miRNA: 3'- uUGGUGGCuUAGCUu----UGGGGCcACCc -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 13006 | 0.67 | 0.597572 |
Target: 5'- cGGCCgACCuGAcgCGAuACCCCGagcacggcGUGGGu -3' miRNA: 3'- -UUGG-UGG-CUuaGCUuUGGGGC--------CACCC- -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 27998 | 0.67 | 0.597572 |
Target: 5'- cGGCCGCCGGcAUC---AgCCCGGUaGGGg -3' miRNA: 3'- -UUGGUGGCU-UAGcuuUgGGGCCA-CCC- -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 9088 | 0.67 | 0.59646 |
Target: 5'- -cUCACUGGccgCGAGGCCguucuugCCGGUGGGc -3' miRNA: 3'- uuGGUGGCUua-GCUUUGG-------GGCCACCC- -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 13517 | 0.68 | 0.564375 |
Target: 5'- -cCCGCUGAuggccuaCG-AGCCgCCGGUGGGu -3' miRNA: 3'- uuGGUGGCUua-----GCuUUGG-GGCCACCC- -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 30912 | 0.68 | 0.541425 |
Target: 5'- --gCACCGGAUacaGAAgggcaucaaucacGCCCCaGUGGGg -3' miRNA: 3'- uugGUGGCUUAg--CUU-------------UGGGGcCACCC- -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 35505 | 0.73 | 0.314273 |
Target: 5'- aGGCCGCgGcGUCauGAAguaccuggccGCCCCGGUGGGu -3' miRNA: 3'- -UUGGUGgCuUAG--CUU----------UGGGGCCACCC- -5' |
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26911 | 5' | -54.9 | NC_005809.1 | + | 3109 | 1.08 | 0.001074 |
Target: 5'- cAACCACCGAAUCGAAACCCCGGUGGGu -3' miRNA: 3'- -UUGGUGGCUUAGCUUUGGGGCCACCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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