Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 39628 | 0.66 | 0.758421 |
Target: 5'- uUCUCGcGCuGCGAacUGGAa-CAAcGGGCCg -3' miRNA: 3'- -GGAGC-CGcUGCU--ACCUaaGUU-CCCGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 15167 | 0.66 | 0.755297 |
Target: 5'- gCCaggCGcGCGACGAcuacaagagcgacaUGGAUUUGcuGGCCg -3' miRNA: 3'- -GGa--GC-CGCUGCU--------------ACCUAAGUucCCGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 33161 | 0.66 | 0.747964 |
Target: 5'- -gUgGGCGAUGGUGGAguugCGGaaguGGGCg -3' miRNA: 3'- ggAgCCGCUGCUACCUaa--GUU----CCCGg -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 327 | 0.66 | 0.747964 |
Target: 5'- aCCgucaGGCuGGCGGUGGcgUCGcgcAGcaGGCCg -3' miRNA: 3'- -GGag--CCG-CUGCUACCuaAGU---UC--CCGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 29966 | 0.66 | 0.736323 |
Target: 5'- gUCgCGGCGcACGAcggccUGGAUgcagccgUCGAacGGGCCa -3' miRNA: 3'- -GGaGCCGC-UGCU-----ACCUA-------AGUU--CCCGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 17894 | 0.66 | 0.726701 |
Target: 5'- gCCUgGGCGugGAcgUGGcccgCGGcGGGCg -3' miRNA: 3'- -GGAgCCGCugCU--ACCuaa-GUU-CCCGg -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 41280 | 0.66 | 0.720242 |
Target: 5'- cCCUgGGCGcgGCGGUGuGGgcgggCAucaccucgaaacuugGGGGCCa -3' miRNA: 3'- -GGAgCCGC--UGCUAC-CUaa---GU---------------UCCCGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 20092 | 0.67 | 0.705051 |
Target: 5'- uCCUUGGCGACuucGGAa--AAGGcGCCc -3' miRNA: 3'- -GGAGCCGCUGcuaCCUaagUUCC-CGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 31002 | 0.67 | 0.683109 |
Target: 5'- cCCUgGGCGGC-AUGGcUUCGAugaccggcGGGCa -3' miRNA: 3'- -GGAgCCGCUGcUACCuAAGUU--------CCCGg -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 14815 | 0.67 | 0.672057 |
Target: 5'- aCCUCGGCGGCGcUGccUUCGcccAGGucgauGCCg -3' miRNA: 3'- -GGAGCCGCUGCuACcuAAGU---UCC-----CGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 9456 | 0.67 | 0.669842 |
Target: 5'- --aCGGCGACauucagggccuUGGGUUCAuGGGCg -3' miRNA: 3'- ggaGCCGCUGcu---------ACCUAAGUuCCCGg -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 14364 | 0.68 | 0.649849 |
Target: 5'- uCgUCGGCGugGccgaccUGGA--CAAGGcGCCg -3' miRNA: 3'- -GgAGCCGCugCu-----ACCUaaGUUCC-CGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 8625 | 0.68 | 0.649849 |
Target: 5'- uUCUCGGCcgcuGCGGUGGcgaggUCGccGGCCu -3' miRNA: 3'- -GGAGCCGc---UGCUACCua---AGUucCCGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 33738 | 0.68 | 0.649849 |
Target: 5'- aCgUCGGCGAgGAcGGuaUCAA-GGCCg -3' miRNA: 3'- -GgAGCCGCUgCUaCCuaAGUUcCCGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 683 | 0.68 | 0.638715 |
Target: 5'- gCCUaCGGCGGCGccGGcc----GGGCCg -3' miRNA: 3'- -GGA-GCCGCUGCuaCCuaaguuCCCGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 23783 | 0.68 | 0.638715 |
Target: 5'- gCCgCGGCuACGAagaUGGAUUCcguGGuGCCg -3' miRNA: 3'- -GGaGCCGcUGCU---ACCUAAGuu-CC-CGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 8241 | 0.68 | 0.638715 |
Target: 5'- cCCUCGuCGGCGAagucgcUGGAaucauccgggcaUUCGgcuuccAGGGCCa -3' miRNA: 3'- -GGAGCcGCUGCU------ACCU------------AAGU------UCCCGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 33130 | 0.68 | 0.635373 |
Target: 5'- cCCUCGGCGugGAcGcGAccaacgacgcuaUUCAAGaccugcaagcccgcGGCCu -3' miRNA: 3'- -GGAGCCGCugCUaC-CU------------AAGUUC--------------CCGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 5474 | 0.68 | 0.627574 |
Target: 5'- gCCgCGGuCGuuGAUGGucuggUCGAGGuGCCa -3' miRNA: 3'- -GGaGCC-GCugCUACCua---AGUUCC-CGG- -5' |
|||||||
26913 | 3' | -54.1 | NC_005809.1 | + | 8447 | 0.68 | 0.616438 |
Target: 5'- -aUCGGCG-CGAUgucGGcgUCGAGGugGCCu -3' miRNA: 3'- ggAGCCGCuGCUA---CCuaAGUUCC--CGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home