Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26914 | 5' | -55.7 | NC_005809.1 | + | 1740 | 1.11 | 0.000448 |
Target: 5'- gUAGAUGAACACCGGGCGGUCAUGGCCg -3' miRNA: 3'- -AUCUACUUGUGGCCCGCCAGUACCGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 4523 | 0.74 | 0.202933 |
Target: 5'- --cGUGAACguggcguGCUGGGCGGUCGUGccGCCg -3' miRNA: 3'- aucUACUUG-------UGGCCCGCCAGUAC--CGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 29612 | 0.73 | 0.232832 |
Target: 5'- cAGuUGuccAGCGCCGGGCGcUUGUGGCCg -3' miRNA: 3'- aUCuAC---UUGUGGCCCGCcAGUACCGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 37811 | 0.73 | 0.252098 |
Target: 5'- gUGGgcGAACGCCGagaacaucGCGGcCGUGGCCg -3' miRNA: 3'- -AUCuaCUUGUGGCc-------CGCCaGUACCGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 17885 | 0.73 | 0.258806 |
Target: 5'- -cGAUGGACAgcCUGGGCguGGaCGUGGCCc -3' miRNA: 3'- auCUACUUGU--GGCCCG--CCaGUACCGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 11023 | 0.7 | 0.386287 |
Target: 5'- -cGAUGAacaccugcuGCACCGGGCcGUUcucGGCCg -3' miRNA: 3'- auCUACU---------UGUGGCCCGcCAGua-CCGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 1440 | 0.69 | 0.414376 |
Target: 5'- aAGAUGGcaaACACCuucuugacGGcGCGGUCGgcGGCCu -3' miRNA: 3'- aUCUACU---UGUGG--------CC-CGCCAGUa-CCGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 22479 | 0.69 | 0.424014 |
Target: 5'- aGGcgGAACcaggggcggGCUGGGCuGGUCAUGcccGCCa -3' miRNA: 3'- aUCuaCUUG---------UGGCCCG-CCAGUAC---CGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 6205 | 0.69 | 0.433786 |
Target: 5'- cAGGUGAcgGCGCgCGGcuccUGGUCGUGGUCu -3' miRNA: 3'- aUCUACU--UGUG-GCCc---GCCAGUACCGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 39910 | 0.68 | 0.453713 |
Target: 5'- -uGAUcGAACACUGGGCGaccgC-UGGCCc -3' miRNA: 3'- auCUA-CUUGUGGCCCGCca--GuACCGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 34433 | 0.68 | 0.473095 |
Target: 5'- gAGGUGAACggcaaggGCUGGGaaGUCAccgccgaaaUGGCCg -3' miRNA: 3'- aUCUACUUG-------UGGCCCgcCAGU---------ACCGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 9837 | 0.67 | 0.527037 |
Target: 5'- ---uUGGugG--GGGCGGUCAUGGCg -3' miRNA: 3'- aucuACUugUggCCCGCCAGUACCGg -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 18855 | 0.67 | 0.537893 |
Target: 5'- ----aGAAgGCCGGGCGGccCAUGcCCa -3' miRNA: 3'- aucuaCUUgUGGCCCGCCa-GUACcGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 5825 | 0.66 | 0.570887 |
Target: 5'- gGGcAUGGcgugccgcaGCACCGuGCGGUCgaaGUGGCUa -3' miRNA: 3'- aUC-UACU---------UGUGGCcCGCCAG---UACCGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 2221 | 0.66 | 0.570887 |
Target: 5'- cGGGU-AGCACCacgcgcagcaGGCGGcgCGUGGCCg -3' miRNA: 3'- aUCUAcUUGUGGc---------CCGCCa-GUACCGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 5460 | 0.66 | 0.570887 |
Target: 5'- -cGAUGuuccCGCCGGGCGG-CGaGGUg -3' miRNA: 3'- auCUACuu--GUGGCCCGCCaGUaCCGg -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 22768 | 0.66 | 0.575327 |
Target: 5'- aGGGUGAgggccgauuggucaACGCCcugcGGGcCGGUCAgcauggugccggacUGGCCc -3' miRNA: 3'- aUCUACU--------------UGUGG----CCC-GCCAGU--------------ACCGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 7158 | 0.66 | 0.582001 |
Target: 5'- cUGGAUGAccaGgGCCGGGCGcuuGUCGgauucgggGGCg -3' miRNA: 3'- -AUCUACU---UgUGGCCCGC---CAGUa-------CCGg -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 41581 | 0.66 | 0.593157 |
Target: 5'- -cGGUGAaccacgGCACCGgccaGGCGGcCAagUGGCUg -3' miRNA: 3'- auCUACU------UGUGGC----CCGCCaGU--ACCGG- -5' |
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26914 | 5' | -55.7 | NC_005809.1 | + | 24567 | 0.66 | 0.593157 |
Target: 5'- -cGAUGGcgAgGCCGGccaCGGUCG-GGCCg -3' miRNA: 3'- auCUACU--UgUGGCCc--GCCAGUaCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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