Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 26914 | 5' | -55.7 | NC_005809.1 | + | 6205 | 0.69 | 0.433786 |
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Target: 5'- cAGGUGAcgGCGCgCGGcuccUGGUCGUGGUCu -3' miRNA: 3'- aUCUACU--UGUG-GCCc---GCCAGUACCGG- -5' |
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| 26914 | 5' | -55.7 | NC_005809.1 | + | 22479 | 0.69 | 0.424014 |
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Target: 5'- aGGcgGAACcaggggcggGCUGGGCuGGUCAUGcccGCCa -3' miRNA: 3'- aUCuaCUUG---------UGGCCCG-CCAGUAC---CGG- -5' |
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| 26914 | 5' | -55.7 | NC_005809.1 | + | 1440 | 0.69 | 0.414376 |
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Target: 5'- aAGAUGGcaaACACCuucuugacGGcGCGGUCGgcGGCCu -3' miRNA: 3'- aUCUACU---UGUGG--------CC-CGCCAGUa-CCGG- -5' |
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| 26914 | 5' | -55.7 | NC_005809.1 | + | 11023 | 0.7 | 0.386287 |
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Target: 5'- -cGAUGAacaccugcuGCACCGGGCcGUUcucGGCCg -3' miRNA: 3'- auCUACU---------UGUGGCCCGcCAGua-CCGG- -5' |
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| 26914 | 5' | -55.7 | NC_005809.1 | + | 17885 | 0.73 | 0.258806 |
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Target: 5'- -cGAUGGACAgcCUGGGCguGGaCGUGGCCc -3' miRNA: 3'- auCUACUUGU--GGCCCG--CCaGUACCGG- -5' |
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| 26914 | 5' | -55.7 | NC_005809.1 | + | 37811 | 0.73 | 0.252098 |
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Target: 5'- gUGGgcGAACGCCGagaacaucGCGGcCGUGGCCg -3' miRNA: 3'- -AUCuaCUUGUGGCc-------CGCCaGUACCGG- -5' |
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| 26914 | 5' | -55.7 | NC_005809.1 | + | 29612 | 0.73 | 0.232832 |
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Target: 5'- cAGuUGuccAGCGCCGGGCGcUUGUGGCCg -3' miRNA: 3'- aUCuAC---UUGUGGCCCGCcAGUACCGG- -5' |
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| 26914 | 5' | -55.7 | NC_005809.1 | + | 4523 | 0.74 | 0.202933 |
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Target: 5'- --cGUGAACguggcguGCUGGGCGGUCGUGccGCCg -3' miRNA: 3'- aucUACUUG-------UGGCCCGCCAGUAC--CGG- -5' |
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| 26914 | 5' | -55.7 | NC_005809.1 | + | 1740 | 1.11 | 0.000448 |
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Target: 5'- gUAGAUGAACACCGGGCGGUCAUGGCCg -3' miRNA: 3'- -AUCUACUUGUGGCCCGCCAGUACCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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