Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26915 | 3' | -62.2 | NC_005809.1 | + | 42185 | 0.66 | 0.313076 |
Target: 5'- aGUCGCGC-GCuGGCCGcgcucaaUCGgCAGGc -3' miRNA: 3'- gCAGCGCGuCGuCCGGCa------GGCgGUCC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 10478 | 0.68 | 0.253871 |
Target: 5'- aGUCGCGCAGCaccggcccgaacGGGCCGugcucUugaucgaacugcugaCCGCCGGc -3' miRNA: 3'- gCAGCGCGUCG------------UCCGGC-----A---------------GGCGGUCc -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 33818 | 0.67 | 0.266767 |
Target: 5'- cCG-CGCGCaaauuccauguugacGGUAGcGCCGcgcCCGCCGGGc -3' miRNA: 3'- -GCaGCGCG---------------UCGUC-CGGCa--GGCGGUCC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 15386 | 0.67 | 0.270738 |
Target: 5'- gCGUC-CGCGuGCGGGCCGgcgaagaUGCCGGa -3' miRNA: 3'- -GCAGcGCGU-CGUCCGGCag-----GCGGUCc -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 8390 | 0.67 | 0.277461 |
Target: 5'- -cUCGCGCuGGCugcguaGCCaGUCgGCCAGGg -3' miRNA: 3'- gcAGCGCG-UCGuc----CGG-CAGgCGGUCC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 6377 | 0.67 | 0.283625 |
Target: 5'- aCGUCG-GCAaucaggcGCAGGCCGgCCgGCCcGGu -3' miRNA: 3'- -GCAGCgCGU-------CGUCCGGCaGG-CGGuCC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 4528 | 0.67 | 0.284317 |
Target: 5'- aCGUgGCGUgcugGGC-GGUCGUgCCGCCGcGGa -3' miRNA: 3'- -GCAgCGCG----UCGuCCGGCA-GGCGGU-CC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 8221 | 0.67 | 0.291305 |
Target: 5'- aGUCGCGCuGGUcGGCgG-CCGUCAGc -3' miRNA: 3'- gCAGCGCG-UCGuCCGgCaGGCGGUCc -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 18412 | 0.66 | 0.305685 |
Target: 5'- aCGUCgGCGaAGguGGCguUGUCCGCCGa- -3' miRNA: 3'- -GCAG-CGCgUCguCCG--GCAGGCGGUcc -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 2232 | 0.68 | 0.245152 |
Target: 5'- --aCGCGCAGCAGGCgG--CGCguGGc -3' miRNA: 3'- gcaGCGCGUCGUCCGgCagGCGguCC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 34833 | 0.68 | 0.239077 |
Target: 5'- uCGUCGCcaaCAGCAaGCCGgCCGCCGa- -3' miRNA: 3'- -GCAGCGc--GUCGUcCGGCaGGCGGUcc -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 1107 | 0.68 | 0.227306 |
Target: 5'- uGUCGCGCGGCAuGUCGcgcaUCgGCCcGGu -3' miRNA: 3'- gCAGCGCGUCGUcCGGC----AGgCGGuCC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 24552 | 0.74 | 0.091976 |
Target: 5'- gGUCGCGCAGCgcggcgauggcgAGGCCGgccaCgGUCGGGc -3' miRNA: 3'- gCAGCGCGUCG------------UCCGGCa---GgCGGUCC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 24669 | 0.72 | 0.12088 |
Target: 5'- uGUCGCGCccgccGCGGGCCacGUCCacgcCCAGGc -3' miRNA: 3'- gCAGCGCGu----CGUCCGG--CAGGc---GGUCC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 25301 | 0.72 | 0.132503 |
Target: 5'- gGUCGUGCGGCcGGCCcugccaccggcgcucGUC-GCCGGGa -3' miRNA: 3'- gCAGCGCGUCGuCCGG---------------CAGgCGGUCC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 32517 | 0.71 | 0.145925 |
Target: 5'- --cCGCGCccguGCAGGCUGgugaugCCGgCCAGGa -3' miRNA: 3'- gcaGCGCGu---CGUCCGGCa-----GGC-GGUCC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 5896 | 0.7 | 0.166625 |
Target: 5'- gGUCGC-CAGCGuGGUgagUGUgCCGCCGGGa -3' miRNA: 3'- gCAGCGcGUCGU-CCG---GCA-GGCGGUCC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 40811 | 0.69 | 0.18992 |
Target: 5'- cCGaCGCGCcaggcGCAGGCCGgccaugaCCGCCcGGu -3' miRNA: 3'- -GCaGCGCGu----CGUCCGGCa------GGCGGuCC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 23738 | 0.69 | 0.19491 |
Target: 5'- uCGguggCGCGCAGCAGcgccauGCCGgcgCCaCCGGGc -3' miRNA: 3'- -GCa---GCGCGUCGUC------CGGCa--GGcGGUCC- -5' |
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26915 | 3' | -62.2 | NC_005809.1 | + | 12008 | 0.69 | 0.210572 |
Target: 5'- aCGUCGgccaGCAGCGcGGCCGUggCCgGCgAGGu -3' miRNA: 3'- -GCAGCg---CGUCGU-CCGGCA--GG-CGgUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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