miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26917 3' -56.7 NC_005809.1 + 357 0.72 0.252233
Target:  5'- aGGC-CGUCCg---CCAgGCCCGAGAa -3'
miRNA:   3'- gCCGuGCAGGuguaGGUgCGGGUUCU- -5'
26917 3' -56.7 NC_005809.1 + 1113 0.67 0.522548
Target:  5'- gCGGCAUGUCgCGCAUCg--GCCCGGu- -3'
miRNA:   3'- -GCCGUGCAG-GUGUAGgugCGGGUUcu -5'
26917 3' -56.7 NC_005809.1 + 1291 0.71 0.279544
Target:  5'- -uGCcCGcCCACAccgCCGCGCCCAGGGc -3'
miRNA:   3'- gcCGuGCaGGUGUa--GGUGCGGGUUCU- -5'
26917 3' -56.7 NC_005809.1 + 1417 1.09 0.000553
Target:  5'- cCGGCACGUCCACAUCCACGCCCAAGAu -3'
miRNA:   3'- -GCCGUGCAGGUGUAGGUGCGGGUUCU- -5'
26917 3' -56.7 NC_005809.1 + 1461 0.67 0.522548
Target:  5'- aCGGCGCgGUCgGCGgccUCCugGCaggCCGGGGu -3'
miRNA:   3'- -GCCGUG-CAGgUGU---AGGugCG---GGUUCU- -5'
26917 3' -56.7 NC_005809.1 + 4773 0.68 0.460486
Target:  5'- uCGGCGuuCGcCCACA-CUGCGCCCAGc- -3'
miRNA:   3'- -GCCGU--GCaGGUGUaGGUGCGGGUUcu -5'
26917 3' -56.7 NC_005809.1 + 5010 0.66 0.56566
Target:  5'- uCGGCGCaGUCCGCuUUCAgCGCCgCGAu- -3'
miRNA:   3'- -GCCGUG-CAGGUGuAGGU-GCGG-GUUcu -5'
26917 3' -56.7 NC_005809.1 + 5362 0.74 0.204223
Target:  5'- uGGC-CGcCUGCA-CCGCGCCCAGGGu -3'
miRNA:   3'- gCCGuGCaGGUGUaGGUGCGGGUUCU- -5'
26917 3' -56.7 NC_005809.1 + 5531 0.68 0.42135
Target:  5'- cCGGC-CGcCCAgGUUC-CGCCCAGGu -3'
miRNA:   3'- -GCCGuGCaGGUgUAGGuGCGGGUUCu -5'
26917 3' -56.7 NC_005809.1 + 6328 0.68 0.42135
Target:  5'- gCGGCGCGuUCCGCcccagCCaaaGCGCCCGGc- -3'
miRNA:   3'- -GCCGUGC-AGGUGua---GG---UGCGGGUUcu -5'
26917 3' -56.7 NC_005809.1 + 6879 0.69 0.375366
Target:  5'- uCGGCACGUCCAcCAUCugCugGCaucgcaucaUCAGGAa -3'
miRNA:   3'- -GCCGUGCAGGU-GUAG--GugCG---------GGUUCU- -5'
26917 3' -56.7 NC_005809.1 + 7772 0.67 0.491063
Target:  5'- cCGGCGCGaUCUgcgccgGCGUCCAcccuucgcCGCCCAgcAGGc -3'
miRNA:   3'- -GCCGUGC-AGG------UGUAGGU--------GCGGGU--UCU- -5'
26917 3' -56.7 NC_005809.1 + 8053 0.66 0.56566
Target:  5'- -cGC-CGUCCAUGaCgCGCGCCCAGGu -3'
miRNA:   3'- gcCGuGCAGGUGUaG-GUGCGGGUUCu -5'
26917 3' -56.7 NC_005809.1 + 8496 0.77 0.120945
Target:  5'- uCGGCAUaGUCCACGUCgAUGCCCuuGAu -3'
miRNA:   3'- -GCCGUG-CAGGUGUAGgUGCGGGuuCU- -5'
26917 3' -56.7 NC_005809.1 + 9212 0.66 0.576593
Target:  5'- gCGGCGCGgCgCACGUUCugcggcGCGCCCGGc- -3'
miRNA:   3'- -GCCGUGCaG-GUGUAGG------UGCGGGUUcu -5'
26917 3' -56.7 NC_005809.1 + 9444 0.7 0.357947
Target:  5'- -cGUugGU-CGCGUCCACGCCgAGGGc -3'
miRNA:   3'- gcCGugCAgGUGUAGGUGCGGgUUCU- -5'
26917 3' -56.7 NC_005809.1 + 10531 0.68 0.470569
Target:  5'- cCGGcCACGcuuUCCGCcgCCACGCgCAAcGGg -3'
miRNA:   3'- -GCC-GUGC---AGGUGuaGGUGCGgGUU-CU- -5'
26917 3' -56.7 NC_005809.1 + 11214 0.66 0.56566
Target:  5'- cCGcGCAUGaccgCCACGUucccgcCCACGCCCAc-- -3'
miRNA:   3'- -GC-CGUGCa---GGUGUA------GGUGCGGGUucu -5'
26917 3' -56.7 NC_005809.1 + 11592 0.68 0.470569
Target:  5'- uGaGCAgauCGUCCACcgUCACGCCgAAGu -3'
miRNA:   3'- gC-CGU---GCAGGUGuaGGUGCGGgUUCu -5'
26917 3' -56.7 NC_005809.1 + 13156 0.69 0.411883
Target:  5'- gCGaGCGCGUggGCAa-CGCGCCCAAGAu -3'
miRNA:   3'- -GC-CGUGCAggUGUagGUGCGGGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.