Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26918 | 3' | -53.8 | NC_005809.1 | + | 982 | 0.67 | 0.712273 |
Target: 5'- gCCac-UUgGCCGCCUGGCGGUgccgUGGu -3' miRNA: 3'- gGGaauAAgCGGCGGGUCGUCAa---GCC- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 1239 | 0.66 | 0.764547 |
Target: 5'- cCCCUUgagugauauaaaaAUUcCGCCGUCCGGCgAGcgcCGGu -3' miRNA: 3'- -GGGAA-------------UAA-GCGGCGGGUCG-UCaa-GCC- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 1522 | 1.12 | 0.000738 |
Target: 5'- cCCCUUAUUCGCCGCCCAGCAGUUCGGc -3' miRNA: 3'- -GGGAAUAAGCGGCGGGUCGUCAAGCC- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 2063 | 0.66 | 0.733927 |
Target: 5'- uUCCUcggggUCGUCGCCCAGCAccaCGa -3' miRNA: 3'- -GGGAaua--AGCGGCGGGUCGUcaaGCc -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 2668 | 0.66 | 0.755157 |
Target: 5'- --------gGUCGCCCAGguGUUCGa -3' miRNA: 3'- gggaauaagCGGCGGGUCguCAAGCc -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 2732 | 0.67 | 0.701318 |
Target: 5'- aCgCUUGagCGCgGCCCGGCGcuGcUCGGg -3' miRNA: 3'- -GgGAAUaaGCGgCGGGUCGU--CaAGCC- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 4864 | 0.67 | 0.701318 |
Target: 5'- gCCCggucaggUCGuuGCCCAGCg---CGGc -3' miRNA: 3'- -GGGaaua---AGCggCGGGUCGucaaGCC- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 5231 | 0.68 | 0.645727 |
Target: 5'- aCCCagcaGUUCGCgcaguuCGgCCGGCAGgUCGGg -3' miRNA: 3'- -GGGaa--UAAGCG------GCgGGUCGUCaAGCC- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 5793 | 0.66 | 0.723147 |
Target: 5'- uCCCgccaUCGCgGCagcgCCAGCGGauagUCGGg -3' miRNA: 3'- -GGGaauaAGCGgCG----GGUCGUCa---AGCC- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 7270 | 0.68 | 0.656915 |
Target: 5'- gCCUUGUgcaGCUuCUCGGCGGUggUCGGa -3' miRNA: 3'- gGGAAUAag-CGGcGGGUCGUCA--AGCC- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 7426 | 0.78 | 0.171814 |
Target: 5'- aCCggAUg-GCCGgCCAGCAGUUCGGc -3' miRNA: 3'- gGGaaUAagCGGCgGGUCGUCAAGCC- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 7796 | 0.84 | 0.072816 |
Target: 5'- aCCCU---UCGCCGCCCAGCAGgcgcUGGa -3' miRNA: 3'- -GGGAauaAGCGGCGGGUCGUCaa--GCC- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 8396 | 0.7 | 0.496298 |
Target: 5'- ------aUCGCCGCCCacgugucgggcagcgAGCAGUUCGcGg -3' miRNA: 3'- gggaauaAGCGGCGGG---------------UCGUCAAGC-C- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 8681 | 0.68 | 0.634526 |
Target: 5'- -gCUgcugCGCCGCCCAGguGUgCGc -3' miRNA: 3'- ggGAauaaGCGGCGGGUCguCAaGCc -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 9547 | 0.67 | 0.66808 |
Target: 5'- -aCUUGcacUUGCCGCCCAGCA--UCGu -3' miRNA: 3'- ggGAAUa--AGCGGCGGGUCGUcaAGCc -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 10089 | 0.66 | 0.743539 |
Target: 5'- gCCUUggAUUCgggcgcaucgGCCGCCCccaccucGGCAGUagGGg -3' miRNA: 3'- gGGAA--UAAG----------CGGCGGG-------UCGUCAagCC- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 10284 | 0.7 | 0.492098 |
Target: 5'- gCCC-UGUagGUCGUCCAGCAccUCGGg -3' miRNA: 3'- -GGGaAUAagCGGCGGGUCGUcaAGCC- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 11999 | 0.69 | 0.578686 |
Target: 5'- gCCUUuuccaCGUCGgCCAGCAGcgCGGc -3' miRNA: 3'- gGGAAuaa--GCGGCgGGUCGUCaaGCC- -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 16812 | 0.71 | 0.431253 |
Target: 5'- aUCgUUGc-CGCCGCCCAGCAGcgCGc -3' miRNA: 3'- -GGgAAUaaGCGGCGGGUCGUCaaGCc -5' |
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26918 | 3' | -53.8 | NC_005809.1 | + | 17624 | 0.7 | 0.513255 |
Target: 5'- gCCUcgaUGUUUGCCGCaucgugCGGCAGUaCGGc -3' miRNA: 3'- gGGA---AUAAGCGGCGg-----GUCGUCAaGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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