miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2692 3' -52.7 NC_001491.2 + 125930 0.66 0.97774
Target:  5'- -cUCUGGGUGcuGGGGGcAGCAGAc--- -3'
miRNA:   3'- ucAGGCCCACu-CCUCC-UCGUUUauag -5'
2692 3' -52.7 NC_001491.2 + 55883 0.66 0.969537
Target:  5'- aAG-CgCGGGUGAGGuuGGGGGCAu----- -3'
miRNA:   3'- -UCaG-GCCCACUCC--UCCUCGUuuauag -5'
2692 3' -52.7 NC_001491.2 + 92987 0.66 0.969537
Target:  5'- gGGuUUCGGGaGAGGuGGGGGUggggGAAUAUCa -3'
miRNA:   3'- -UC-AGGCCCaCUCC-UCCUCG----UUUAUAG- -5'
2692 3' -52.7 NC_001491.2 + 20431 0.67 0.951431
Target:  5'- uGGUCCGGGUGuuuucuAGGGGGucCA---GUCg -3'
miRNA:   3'- -UCAGGCCCAC------UCCUCCucGUuuaUAG- -5'
2692 3' -52.7 NC_001491.2 + 110288 0.69 0.901385
Target:  5'- gGGUgUGGGUGggggcaaccgcgaaAGGGGGAGCuuuaaaaauAGAUAUCu -3'
miRNA:   3'- -UCAgGCCCAC--------------UCCUCCUCG---------UUUAUAG- -5'
2692 3' -52.7 NC_001491.2 + 144990 0.69 0.896738
Target:  5'- --gCCGGGUGAuGAGGAGCccGUGg- -3'
miRNA:   3'- ucaGGCCCACUcCUCCUCGuuUAUag -5'
2692 3' -52.7 NC_001491.2 + 61694 0.69 0.882803
Target:  5'- ---gCGGGUGGGGGGuGGCGAGUAa- -3'
miRNA:   3'- ucagGCCCACUCCUCcUCGUUUAUag -5'
2692 3' -52.7 NC_001491.2 + 142620 0.7 0.860141
Target:  5'- cGGUUauugaGGGUgGGGGGGGGGCAAAa--- -3'
miRNA:   3'- -UCAGg----CCCA-CUCCUCCUCGUUUauag -5'
2692 3' -52.7 NC_001491.2 + 44434 0.7 0.852142
Target:  5'- aAGUggaUUGGGgcaGAGGGGGAGCGGGUGg- -3'
miRNA:   3'- -UCA---GGCCCa--CUCCUCCUCGUUUAUag -5'
2692 3' -52.7 NC_001491.2 + 44496 0.7 0.852142
Target:  5'- aAGUggaUUGGGgcaGAGGGGGAGCGGGUGg- -3'
miRNA:   3'- -UCA---GGCCCa--CUCCUCCUCGUUUAUag -5'
2692 3' -52.7 NC_001491.2 + 44559 0.7 0.852142
Target:  5'- aAGUggaUUGGGgcaGAGGGGGAGCGGGUGg- -3'
miRNA:   3'- -UCA---GGCCCa--CUCCUCCUCGUUUAUag -5'
2692 3' -52.7 NC_001491.2 + 43812 0.71 0.8181
Target:  5'- -aUCCGGGUucauuGGAGGuAGCAGAUcAUCa -3'
miRNA:   3'- ucAGGCCCAcu---CCUCC-UCGUUUA-UAG- -5'
2692 3' -52.7 NC_001491.2 + 44352 0.75 0.605626
Target:  5'- gGGagCGGGUGgaagaguGGGAGGAGCAGGUAc- -3'
miRNA:   3'- -UCagGCCCAC-------UCCUCCUCGUUUAUag -5'
2692 3' -52.7 NC_001491.2 + 102324 1.02 0.01576
Target:  5'- cAGaUCCGGGUGAGGAGGAGCAAAUAUCc -3'
miRNA:   3'- -UC-AGGCCCACUCCUCCUCGUUUAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.