miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2692 5' -50.9 NC_001491.2 + 20327 0.66 0.995338
Target:  5'- uGGUUGGGUggggccgggGCgcGUcCGCCUGGCCUu -3'
miRNA:   3'- cCCAACCCA---------CGaaUAaGUGGGUUGGG- -5'
2692 5' -50.9 NC_001491.2 + 118519 0.66 0.994574
Target:  5'- ----aGGG-GU----UCACCCAGCCCg -3'
miRNA:   3'- cccaaCCCaCGaauaAGUGGGUUGGG- -5'
2692 5' -50.9 NC_001491.2 + 140654 0.66 0.991658
Target:  5'- -aGUUGGGUGCUccgagC-CCCGGCUg -3'
miRNA:   3'- ccCAACCCACGAauaa-GuGGGUUGGg -5'
2692 5' -50.9 NC_001491.2 + 122673 0.66 0.991189
Target:  5'- gGGGaUUGGGUGUgauggcgcugucAUUCAcgcuuuccCCCGACCUc -3'
miRNA:   3'- -CCC-AACCCACGaa----------UAAGU--------GGGUUGGG- -5'
2692 5' -50.9 NC_001491.2 + 4468 0.66 0.99032
Target:  5'- cGGGUUGGGUacacugcGuCUUGauaccUUCAgucgagcaaauuCCCAGCCUg -3'
miRNA:   3'- -CCCAACCCA-------C-GAAU-----AAGU------------GGGUUGGG- -5'
2692 5' -50.9 NC_001491.2 + 19941 0.67 0.987621
Target:  5'- cGGGUUGGGgGCUcgcgUCuacuuCCUcgucgGGCCCa -3'
miRNA:   3'- -CCCAACCCaCGAaua-AGu----GGG-----UUGGG- -5'
2692 5' -50.9 NC_001491.2 + 20724 0.67 0.982219
Target:  5'- gGGGUUuGGUGUgugcUAUgcagccCGCCCAcucaGCCCg -3'
miRNA:   3'- -CCCAAcCCACGa---AUAa-----GUGGGU----UGGG- -5'
2692 5' -50.9 NC_001491.2 + 89625 0.68 0.975211
Target:  5'- gGGGUUgagcgcucgGGGUGUaaUUGUUUACCUc-CCCa -3'
miRNA:   3'- -CCCAA---------CCCACG--AAUAAGUGGGuuGGG- -5'
2692 5' -50.9 NC_001491.2 + 48575 0.69 0.966376
Target:  5'- cGG-UGGG-GCUUGUgaUCACaCCucuGCCCu -3'
miRNA:   3'- cCCaACCCaCGAAUA--AGUG-GGu--UGGG- -5'
2692 5' -50.9 NC_001491.2 + 127829 0.69 0.966376
Target:  5'- cGGGcUGGGUGUUUGgugggCugCCAGuuCu -3'
miRNA:   3'- -CCCaACCCACGAAUaa---GugGGUUggG- -5'
2692 5' -50.9 NC_001491.2 + 138169 0.69 0.951431
Target:  5'- cGGGUUGaacaGGUGCUUAcgcUCGCCUcucGGCgCCu -3'
miRNA:   3'- -CCCAAC----CCACGAAUa--AGUGGG---UUG-GG- -5'
2692 5' -50.9 NC_001491.2 + 99986 0.7 0.942509
Target:  5'- aGGcu-GGUGCUguaUCGCCCGACCg -3'
miRNA:   3'- cCCaacCCACGAauaAGUGGGUUGGg -5'
2692 5' -50.9 NC_001491.2 + 102288 1.14 0.004486
Target:  5'- gGGGUUGGGUGCUUAUUCACCCAACCCc -3'
miRNA:   3'- -CCCAACCCACGAAUAAGUGGGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.