Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26920 | 3' | -53.9 | NC_005809.1 | + | 20615 | 0.66 | 0.712152 |
Target: 5'- aGGCGGCGUcgcagGUcggUgUCGGCCUGCgCu -3' miRNA: 3'- gUCGUCGCAa----UAa--AgGGUCGGACGgG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 42387 | 0.66 | 0.705444 |
Target: 5'- cCGGCAGCGUgacggugCCCAGCgacaccggggcgcauCcGCCUg -3' miRNA: 3'- -GUCGUCGCAauaaa--GGGUCG---------------GaCGGG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 42018 | 0.66 | 0.700956 |
Target: 5'- uGGUcgaGGCGUgGUUUUUCAGCg-GCCCg -3' miRNA: 3'- gUCG---UCGCAaUAAAGGGUCGgaCGGG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 28404 | 0.66 | 0.689687 |
Target: 5'- cCGGCGGCGcggcg-CCaguagauGCCUGUCCa -3' miRNA: 3'- -GUCGUCGCaauaaaGGgu-----CGGACGGG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 19054 | 0.66 | 0.689687 |
Target: 5'- cCGGCGGCGUcga---UCAGCgUGUCCu -3' miRNA: 3'- -GUCGUCGCAauaaagGGUCGgACGGG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 895 | 0.66 | 0.678359 |
Target: 5'- cCAGCauGGUGggGUUcaUCCCGGCCgcgGCa- -3' miRNA: 3'- -GUCG--UCGCaaUAA--AGGGUCGGa--CGgg -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 1268 | 0.66 | 0.678359 |
Target: 5'- cCGGCgAGCGccgGUaUUCCCGGCCcucGaCCCa -3' miRNA: 3'- -GUCG-UCGCaa-UA-AAGGGUCGGa--C-GGG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 17091 | 0.66 | 0.666983 |
Target: 5'- cCGGC-GCGg---UUCUCGGCCggGCCUu -3' miRNA: 3'- -GUCGuCGCaauaAAGGGUCGGa-CGGG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 35509 | 0.66 | 0.666983 |
Target: 5'- -cGCGGCGUcAUgaaguaCCUGGCC-GCCCc -3' miRNA: 3'- guCGUCGCAaUAaa----GGGUCGGaCGGG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 32201 | 0.66 | 0.655572 |
Target: 5'- -cGCGGgGgauguUUUCUCGcGCCUGUCCg -3' miRNA: 3'- guCGUCgCaau--AAAGGGU-CGGACGGG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 22706 | 0.66 | 0.655572 |
Target: 5'- aAGCAGCaGUUugcgCUCGGUUUGCUCg -3' miRNA: 3'- gUCGUCG-CAAuaaaGGGUCGGACGGG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 8215 | 0.67 | 0.644138 |
Target: 5'- uGGCGGCcaGUUcgUgCgCGGCCgUGCCCu -3' miRNA: 3'- gUCGUCG--CAAuaAaGgGUCGG-ACGGG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 27328 | 0.67 | 0.632691 |
Target: 5'- aGGCGcGCGUUGcUUUCCacguaGGCCggGCCg -3' miRNA: 3'- gUCGU-CGCAAU-AAAGGg----UCGGa-CGGg -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 10166 | 0.67 | 0.621244 |
Target: 5'- uCAGCAGCcagUGUUuugcuugaucgUCCCAcgucaagcgcacGCCgGCCCg -3' miRNA: 3'- -GUCGUCGca-AUAA-----------AGGGU------------CGGaCGGG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 41554 | 0.67 | 0.609808 |
Target: 5'- uCAGCauGGCcgagUAUUUCCCGGCCagugGCgCg -3' miRNA: 3'- -GUCG--UCGca--AUAAAGGGUCGGa---CGgG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 4296 | 0.68 | 0.582464 |
Target: 5'- uCGGCGGUGaacugcaCCAGCUUGCCg -3' miRNA: 3'- -GUCGUCGCaauaaagGGUCGGACGGg -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 14674 | 0.68 | 0.5734 |
Target: 5'- uGGguGCGggUGUUgagcgcuugaagCCCGGCCUGCa- -3' miRNA: 3'- gUCguCGCa-AUAAa-----------GGGUCGGACGgg -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 26672 | 0.68 | 0.571139 |
Target: 5'- gCAGCAGCGgcaagcugCUgGGCCUcaccuacguGCCCg -3' miRNA: 3'- -GUCGUCGCaauaaa--GGgUCGGA---------CGGG- -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 39399 | 0.68 | 0.553135 |
Target: 5'- -cGCAGCGgacg--CCgGGCUUGCCa -3' miRNA: 3'- guCGUCGCaauaaaGGgUCGGACGGg -5' |
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26920 | 3' | -53.9 | NC_005809.1 | + | 37944 | 0.68 | 0.541969 |
Target: 5'- -cGCAGCGUgg---CCCAGCaucCCCg -3' miRNA: 3'- guCGUCGCAauaaaGGGUCGgacGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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