miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26920 3' -53.9 NC_005809.1 + 3009 1.12 0.000554
Target:  5'- gCAGCAGCGUUAUUUCCCAGCCUGCCCu -3'
miRNA:   3'- -GUCGUCGCAAUAAAGGGUCGGACGGG- -5'
26920 3' -53.9 NC_005809.1 + 4127 0.75 0.218163
Target:  5'- -uGCAGCGUUGcUUCCCggcgcauaguggaAGCC-GCCCa -3'
miRNA:   3'- guCGUCGCAAUaAAGGG-------------UCGGaCGGG- -5'
26920 3' -53.9 NC_005809.1 + 34296 0.74 0.25737
Target:  5'- cCGGCAGCGUgg---CCCuggaAGCCgaaUGCCCg -3'
miRNA:   3'- -GUCGUCGCAauaaaGGG----UCGG---ACGGG- -5'
26920 3' -53.9 NC_005809.1 + 7937 0.73 0.286093
Target:  5'- cCGGC-GCGaggAUUUCCgaCAGCUUGCCCg -3'
miRNA:   3'- -GUCGuCGCaa-UAAAGG--GUCGGACGGG- -5'
26920 3' -53.9 NC_005809.1 + 41089 0.73 0.301377
Target:  5'- cCAGCAcuGCGaUAc--CCCGGCCUGCCa -3'
miRNA:   3'- -GUCGU--CGCaAUaaaGGGUCGGACGGg -5'
26920 3' -53.9 NC_005809.1 + 8130 0.73 0.301377
Target:  5'- uCGGCGGUGac--UUCCCAGCCcuUGCCg -3'
miRNA:   3'- -GUCGUCGCaauaAAGGGUCGG--ACGGg -5'
26920 3' -53.9 NC_005809.1 + 16826 0.73 0.317284
Target:  5'- cCAGCAGCGcg----CCCAGCgUGCUg -3'
miRNA:   3'- -GUCGUCGCaauaaaGGGUCGgACGGg -5'
26920 3' -53.9 NC_005809.1 + 19854 0.72 0.359775
Target:  5'- uCAGCAGCGUgGUgagUUCgGGCgUGCCg -3'
miRNA:   3'- -GUCGUCGCAaUAa--AGGgUCGgACGGg -5'
26920 3' -53.9 NC_005809.1 + 18422 0.71 0.406082
Target:  5'- aGGUGGCGUUGUccgCCgAGuCCUGCaCCg -3'
miRNA:   3'- gUCGUCGCAAUAaa-GGgUC-GGACG-GG- -5'
26920 3' -53.9 NC_005809.1 + 27046 0.71 0.415783
Target:  5'- cCGGCAcCGUgcaua-UCGGCCUGCCCa -3'
miRNA:   3'- -GUCGUcGCAauaaagGGUCGGACGGG- -5'
26920 3' -53.9 NC_005809.1 + 687 0.7 0.435604
Target:  5'- aCGGCGGCGccgg--CCgGGCC-GCCCa -3'
miRNA:   3'- -GUCGUCGCaauaaaGGgUCGGaCGGG- -5'
26920 3' -53.9 NC_005809.1 + 6328 0.69 0.487422
Target:  5'- gCGGC-GCGUUccgcCCCAGCCaaagcGCCCg -3'
miRNA:   3'- -GUCGuCGCAAuaaaGGGUCGGa----CGGG- -5'
26920 3' -53.9 NC_005809.1 + 12279 0.69 0.519871
Target:  5'- gGGCGG-GUUGcuggCCCAGCgUGCCg -3'
miRNA:   3'- gUCGUCgCAAUaaa-GGGUCGgACGGg -5'
26920 3' -53.9 NC_005809.1 + 12450 0.69 0.530878
Target:  5'- cCGGCGGCGUg--UUCUggcgCGGCCUcaucGCCUg -3'
miRNA:   3'- -GUCGUCGCAauaAAGG----GUCGGA----CGGG- -5'
26920 3' -53.9 NC_005809.1 + 37944 0.68 0.541969
Target:  5'- -cGCAGCGUgg---CCCAGCaucCCCg -3'
miRNA:   3'- guCGUCGCAauaaaGGGUCGgacGGG- -5'
26920 3' -53.9 NC_005809.1 + 39399 0.68 0.553135
Target:  5'- -cGCAGCGgacg--CCgGGCUUGCCa -3'
miRNA:   3'- guCGUCGCaauaaaGGgUCGGACGGg -5'
26920 3' -53.9 NC_005809.1 + 26672 0.68 0.571139
Target:  5'- gCAGCAGCGgcaagcugCUgGGCCUcaccuacguGCCCg -3'
miRNA:   3'- -GUCGUCGCaauaaa--GGgUCGGA---------CGGG- -5'
26920 3' -53.9 NC_005809.1 + 14674 0.68 0.5734
Target:  5'- uGGguGCGggUGUUgagcgcuugaagCCCGGCCUGCa- -3'
miRNA:   3'- gUCguCGCa-AUAAa-----------GGGUCGGACGgg -5'
26920 3' -53.9 NC_005809.1 + 4296 0.68 0.582464
Target:  5'- uCGGCGGUGaacugcaCCAGCUUGCCg -3'
miRNA:   3'- -GUCGUCGCaauaaagGGUCGGACGGg -5'
26920 3' -53.9 NC_005809.1 + 41554 0.67 0.609808
Target:  5'- uCAGCauGGCcgagUAUUUCCCGGCCagugGCgCg -3'
miRNA:   3'- -GUCG--UCGca--AUAAAGGGUCGGa---CGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.