Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26920 | 5' | -54.7 | NC_005809.1 | + | 16544 | 0.66 | 0.677153 |
Target: 5'- cGCGGGCuuugaugCCAuc-GCCGAGGAaGCc -3' miRNA: 3'- -CGCCCGuua----GGUccuCGGCUCUUaCG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 42481 | 0.66 | 0.676035 |
Target: 5'- uGCGGGgGAUgCCGGG-GCaGAGGAacacgcaaaacccUGCa -3' miRNA: 3'- -CGCCCgUUA-GGUCCuCGgCUCUU-------------ACG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 38431 | 0.66 | 0.66596 |
Target: 5'- gGUGGGCGGcuUCCAcuauGcGCCGGGAA-GCa -3' miRNA: 3'- -CGCCCGUU--AGGUc---CuCGGCUCUUaCG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 10203 | 0.66 | 0.654734 |
Target: 5'- uGCuGGGCGG-CCGGG-GCCucGGcgGCg -3' miRNA: 3'- -CG-CCCGUUaGGUCCuCGGcuCUuaCG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 18042 | 0.66 | 0.654734 |
Target: 5'- gGCGGGCugcUUGGGGGCCuuaccggcgcGGggUGCg -3' miRNA: 3'- -CGCCCGuuaGGUCCUCGGc---------UCuuACG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 29026 | 0.67 | 0.609721 |
Target: 5'- cGUGGGCAccgagUCAGGcGGCCGAcaguucggcgcgGAcgGCa -3' miRNA: 3'- -CGCCCGUua---GGUCC-UCGGCU------------CUuaCG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 19208 | 0.67 | 0.60635 |
Target: 5'- aGCGGGCAcgCCAccguguucaucggcGGcgaGGCCGucGAAUuGCg -3' miRNA: 3'- -CGCCCGUuaGGU--------------CC---UCGGCu-CUUA-CG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 41294 | 0.67 | 0.598493 |
Target: 5'- aGUGGGuCGAgggCCGGGAauaccggcgcucGCCG-GAcgGCg -3' miRNA: 3'- -CGCCC-GUUa--GGUCCU------------CGGCuCUuaCG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 31028 | 0.67 | 0.598493 |
Target: 5'- gGCGGGCAGUCCuaucAGGAuGCCcgcuc-GCa -3' miRNA: 3'- -CGCCCGUUAGG----UCCU-CGGcucuuaCG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 17677 | 0.67 | 0.59513 |
Target: 5'- gGCGGGCugggcguaggcgaaGcgCCAcucGGGCCGGGaAAUGCc -3' miRNA: 3'- -CGCCCG--------------UuaGGUc--CUCGGCUC-UUACG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 3802 | 0.68 | 0.553972 |
Target: 5'- uCGGGCAGcaugaCCAGGcGGUCGGGGGcGCc -3' miRNA: 3'- cGCCCGUUa----GGUCC-UCGGCUCUUaCG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 7859 | 0.7 | 0.448154 |
Target: 5'- gGCGGGCuucgcGGUUCAGGcuucggccgauGGUCGGGaAAUGCu -3' miRNA: 3'- -CGCCCG-----UUAGGUCC-----------UCGGCUC-UUACG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 10560 | 0.72 | 0.337503 |
Target: 5'- cGUGGGC-GUCCAGcGuGUCGAGggUuucGCa -3' miRNA: 3'- -CGCCCGuUAGGUC-CuCGGCUCuuA---CG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 8269 | 0.75 | 0.222395 |
Target: 5'- cCGGGCAuucggcuUCCAGGGccacgcuGCCGGGGcaGUGCa -3' miRNA: 3'- cGCCCGUu------AGGUCCU-------CGGCUCU--UACG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 29075 | 0.75 | 0.211266 |
Target: 5'- aGCGGGUcAUCCucGGGcGCCGAGGucaggcccGUGCg -3' miRNA: 3'- -CGCCCGuUAGG--UCCuCGGCUCU--------UACG- -5' |
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26920 | 5' | -54.7 | NC_005809.1 | + | 3047 | 1.15 | 0.000309 |
Target: 5'- cGCGGGCAAUCCAGGAGCCGAGAAUGCg -3' miRNA: 3'- -CGCCCGUUAGGUCCUCGGCUCUUACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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