miRNA: 3'- -CGGGGCuacaAGCGCGACCucaaGCU- -5'
miRNA: 3'- -CGGGGCUaCAAG-----CGCG-ACCUCaaGCu -5'
miRNA: 3'- -CGGGGCUACAAGCGCGAcCUCAAGCU- -5'
miRNA: 3'- -CGGGGCUACAAGCGCGACCUCAAGCU- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 26921 | 3' | -55.2 | NC_005809.1 | + | 8213 | 0.66 | 0.660967 |
|
Target: 5'- gGCCUCGuag-UCGCGCUGGucggCGGc -3' miRNA: 3'- -CGGGGCuacaAGCGCGACCucaaGCU- -5' |
|||||||
| 26921 | 3' | -55.2 | NC_005809.1 | + | 16506 | 0.71 | 0.397895 |
|
Target: 5'- cGCCCCGA-GUUCgccgaGCGCaUGGAGcgCGc -3' miRNA: 3'- -CGGGGCUaCAAG-----CGCG-ACCUCaaGCu -5' |
|||||||
| 26921 | 3' | -55.2 | NC_005809.1 | + | 2913 | 0.95 | 0.008729 |
|
Target: 5'- cGCCCCGAUGUUCGCGUUcGAGUUCGAc -3' miRNA: 3'- -CGGGGCUACAAGCGCGAcCUCAAGCU- -5' |
|||||||
| 26921 | 3' | -55.2 | NC_005809.1 | + | 3468 | 1.11 | 0.000592 |
|
Target: 5'- cGCCCCGAUGUUCGCGCUGGAGUUCGAc -3' miRNA: 3'- -CGGGGCUACAAGCGCGACCUCAAGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home