miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26921 5' -56.5 NC_005809.1 + 33798 0.66 0.572839
Target:  5'- -cCCAucGUGCGCcGCGUGcu-GCCCGAa -3'
miRNA:   3'- aaGGU--CAUGCGuCGCGCucuUGGGCU- -5'
26921 5' -56.5 NC_005809.1 + 17839 0.66 0.561776
Target:  5'- gUCgAGgccGCGCAgGCGCGguGGAagcgGCCCGAc -3'
miRNA:   3'- aAGgUCa--UGCGU-CGCGC--UCU----UGGGCU- -5'
26921 5' -56.5 NC_005809.1 + 34409 0.66 0.550772
Target:  5'- aUCCGG-GCGCAcGCGCaGGGAcgcaGCgCCGAc -3'
miRNA:   3'- aAGGUCaUGCGU-CGCG-CUCU----UG-GGCU- -5'
26921 5' -56.5 NC_005809.1 + 29772 0.66 0.528972
Target:  5'- -gCCAG-GCGCGuGCGCGAGAuUUCGGc -3'
miRNA:   3'- aaGGUCaUGCGU-CGCGCUCUuGGGCU- -5'
26921 5' -56.5 NC_005809.1 + 28390 0.67 0.486402
Target:  5'- gUUCCAGUucgacgccggcgGCGCGGCGCcaguAGAugCCu- -3'
miRNA:   3'- -AAGGUCA------------UGCGUCGCGc---UCUugGGcu -5'
26921 5' -56.5 NC_005809.1 + 18721 0.67 0.476011
Target:  5'- -aUCGGUACgGCGGCaCGGGAugCCGu -3'
miRNA:   3'- aaGGUCAUG-CGUCGcGCUCUugGGCu -5'
26921 5' -56.5 NC_005809.1 + 35402 0.67 0.476011
Target:  5'- -gUCAGgGCGuCAGCGCGucGGGCCUGGg -3'
miRNA:   3'- aaGGUCaUGC-GUCGCGCu-CUUGGGCU- -5'
26921 5' -56.5 NC_005809.1 + 28641 0.68 0.416165
Target:  5'- aUCCAGUccacgGCGCuGCGCGAcaucgcccuGAACUgGAa -3'
miRNA:   3'- aAGGUCA-----UGCGuCGCGCU---------CUUGGgCU- -5'
26921 5' -56.5 NC_005809.1 + 30351 0.69 0.388017
Target:  5'- -gCCuuGU-CGUcGCGCGAGAACCCGc -3'
miRNA:   3'- aaGGu-CAuGCGuCGCGCUCUUGGGCu -5'
26921 5' -56.5 NC_005809.1 + 6310 0.7 0.330657
Target:  5'- cUCCGGUgcgugcaagACGCGGCGCGuuccgccccagccaaAGcGCCCGGc -3'
miRNA:   3'- aAGGUCA---------UGCGUCGCGC---------------UCuUGGGCU- -5'
26921 5' -56.5 NC_005809.1 + 13916 0.7 0.302871
Target:  5'- gUUCCAGUucagggcgaugucGCGCAGCGCcGuGGACUgGAu -3'
miRNA:   3'- -AAGGUCA-------------UGCGUCGCG-CuCUUGGgCU- -5'
26921 5' -56.5 NC_005809.1 + 9772 0.71 0.267043
Target:  5'- -aCCGGcagacGCGCAGCaccaGCGAGGugCCGAg -3'
miRNA:   3'- aaGGUCa----UGCGUCG----CGCUCUugGGCU- -5'
26921 5' -56.5 NC_005809.1 + 2949 0.98 0.002908
Target:  5'- gUUCCAGUuCGCAGCGCGAGAACCCGAg -3'
miRNA:   3'- -AAGGUCAuGCGUCGCGCUCUUGGGCU- -5'
26921 5' -56.5 NC_005809.1 + 3504 1.07 0.000715
Target:  5'- gUUCCAGUACGCAGCGCGAGAACCCGAg -3'
miRNA:   3'- -AAGGUCAUGCGUCGCGCUCUUGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.