Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26922 | 3' | -60.5 | NC_005809.1 | + | 601 | 0.73 | 0.117064 |
Target: 5'- -uGGCCGCCUgcgggucgGCCa-GCaGCGCCGUGGa -3' miRNA: 3'- cuUCGGCGGG--------UGGaaCG-CGCGGCACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 677 | 0.71 | 0.17146 |
Target: 5'- cAGGCCGCCUACg--GCgGCGCCGgccGGg -3' miRNA: 3'- cUUCGGCGGGUGgaaCG-CGCGGCa--CC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 980 | 0.69 | 0.241113 |
Target: 5'- -cAGCCacuuGgCCGCCUgGCgGUGCCGUGGu -3' miRNA: 3'- cuUCGG----CgGGUGGAaCG-CGCGGCACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 995 | 0.66 | 0.391913 |
Target: 5'- --cGUCGCCCGCUgccCGCGCCacUGGc -3' miRNA: 3'- cuuCGGCGGGUGGaacGCGCGGc-ACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 1762 | 0.68 | 0.260223 |
Target: 5'- -uGGCCgGCCUgcGCCUgGCGCGUCG-GGc -3' miRNA: 3'- cuUCGG-CGGG--UGGAaCGCGCGGCaCC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 4153 | 1.09 | 0.000227 |
Target: 5'- gGAAGCCGCCCACCUUGCGCGCCGUGGu -3' miRNA: 3'- -CUUCGGCGGGUGGAACGCGCGGCACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 6628 | 0.66 | 0.391913 |
Target: 5'- --cGCCGCCaGCUUcGCGCGCU-UGGc -3' miRNA: 3'- cuuCGGCGGgUGGAaCGCGCGGcACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 7259 | 0.7 | 0.211876 |
Target: 5'- cGAuGUCGCCgGCCUUGUGCagcuucucgGCgGUGGu -3' miRNA: 3'- -CUuCGGCGGgUGGAACGCG---------CGgCACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 8036 | 0.74 | 0.099066 |
Target: 5'- aGGGCCGCCguCCUUGC-CGCCGUc- -3' miRNA: 3'- cUUCGGCGGguGGAACGcGCGGCAcc -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 8644 | 0.7 | 0.195837 |
Target: 5'- cGAGGUCGCCgGCCUUcauCGCGCgGUcGGc -3' miRNA: 3'- -CUUCGGCGGgUGGAAc--GCGCGgCA-CC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 8688 | 0.69 | 0.235008 |
Target: 5'- --cGCCGCCCAgg-UGUGCGCCGc-- -3' miRNA: 3'- cuuCGGCGGGUggaACGCGCGGCacc -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 11157 | 0.72 | 0.138073 |
Target: 5'- uGGGCCGCCugcgCACgUUGCGUgcgcuggucgGCCGUGGu -3' miRNA: 3'- cUUCGGCGG----GUGgAACGCG----------CGGCACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 11328 | 0.67 | 0.331242 |
Target: 5'- --cGUCGCCCGgCUcguagcugggccGCGCGCCG-GGg -3' miRNA: 3'- cuuCGGCGGGUgGAa-----------CGCGCGGCaCC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 12665 | 0.67 | 0.324943 |
Target: 5'- --cGUCGCCCAUCaUGCGCagGCgCGUGu -3' miRNA: 3'- cuuCGGCGGGUGGaACGCG--CG-GCACc -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 13916 | 0.7 | 0.211876 |
Target: 5'- cGAGGCCGCCggCACCgaucuggcacUGCGCGCgGaacUGGc -3' miRNA: 3'- -CUUCGGCGG--GUGGa---------ACGCGCGgC---ACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 13998 | 0.68 | 0.260223 |
Target: 5'- --cGCUGCCggugGCCgacgUGCGCGCCGcgaUGGc -3' miRNA: 3'- cuuCGGCGGg---UGGa---ACGCGCGGC---ACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 14242 | 0.66 | 0.365771 |
Target: 5'- cGAGGCCaagGCCaucgaguccgaCGCCgaGCGCGCCGa-- -3' miRNA: 3'- -CUUCGG---CGG-----------GUGGaaCGCGCGGCacc -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 15086 | 0.69 | 0.229033 |
Target: 5'- cAGGCUGCUUugCUgcgaccGCGCGCCGUa- -3' miRNA: 3'- cUUCGGCGGGugGAa-----CGCGCGGCAcc -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 15254 | 0.7 | 0.19073 |
Target: 5'- aAAGCaaCGCgCGCCUgUGgGCGUCGUGGg -3' miRNA: 3'- cUUCG--GCGgGUGGA-ACgCGCGGCACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 16528 | 0.69 | 0.221459 |
Target: 5'- uGGAGCgCGCCCGCCgcGCGggcuuugaugccauCGCCGaGGa -3' miRNA: 3'- -CUUCG-GCGGGUGGaaCGC--------------GCGGCaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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