Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26923 | 3' | -58.9 | NC_005809.1 | + | 26510 | 0.66 | 0.493688 |
Target: 5'- gCGCC-GCgCGCGGcgGCCACGUgcgCGa -3' miRNA: 3'- -GCGGcCG-GUGCCuaUGGUGCGacaGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 2437 | 0.66 | 0.493688 |
Target: 5'- gGCCGGCCucgaagauCGGc-GCCACGaUGUUGc -3' miRNA: 3'- gCGGCCGGu-------GCCuaUGGUGCgACAGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 10785 | 0.66 | 0.493688 |
Target: 5'- -uUCGGCCugGGAUugCAuguacUGCUGcgccUCGg -3' miRNA: 3'- gcGGCCGGugCCUAugGU-----GCGAC----AGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 3739 | 0.66 | 0.493688 |
Target: 5'- aCGCCGGUggugggCACGucGGUGCCGcCGCUGg-- -3' miRNA: 3'- -GCGGCCG------GUGC--CUAUGGU-GCGACagc -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 5266 | 0.66 | 0.483567 |
Target: 5'- -aCCGGCCACcguguuGAUguucGCgGCGUUGUCGg -3' miRNA: 3'- gcGGCCGGUGc-----CUA----UGgUGCGACAGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 41107 | 0.66 | 0.483567 |
Target: 5'- gGCCuGCCA-GGAggccgccgACCGCGCcGUCa -3' miRNA: 3'- gCGGcCGGUgCCUa-------UGGUGCGaCAGc -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 8191 | 0.66 | 0.483567 |
Target: 5'- uGCCGGCgauuucaucgcgCACGGccucGUAgUCGCGCUGgUCGg -3' miRNA: 3'- gCGGCCG------------GUGCC----UAU-GGUGCGAC-AGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 42343 | 0.66 | 0.473546 |
Target: 5'- cCGCCGGCCcuacaacauGCGGcAUACCuacgccaccaugAUGCUGauggCGg -3' miRNA: 3'- -GCGGCCGG---------UGCC-UAUGG------------UGCGACa---GC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 22266 | 0.66 | 0.473546 |
Target: 5'- uCGCCGGCCgucagcgaAUGGugauagACCACgGC-GUCGa -3' miRNA: 3'- -GCGGCCGG--------UGCCua----UGGUG-CGaCAGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 150 | 0.66 | 0.473546 |
Target: 5'- gCGCCaGGCUuccccgcagGCGGAUgcGCCcCGgUGUCGc -3' miRNA: 3'- -GCGG-CCGG---------UGCCUA--UGGuGCgACAGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 15572 | 0.66 | 0.47255 |
Target: 5'- gCGCCGucagugacgacgcGCUGCGGAUgcACCGCGCcaUCGg -3' miRNA: 3'- -GCGGC-------------CGGUGCCUA--UGGUGCGacAGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 33639 | 0.66 | 0.463632 |
Target: 5'- cCGCUGGCaauUACGGcacgGCCAcCGCUGgCGa -3' miRNA: 3'- -GCGGCCG---GUGCCua--UGGU-GCGACaGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 33543 | 0.66 | 0.463632 |
Target: 5'- cCGCUGGCaauUACGGcacgGCCAcCGCUGgCGa -3' miRNA: 3'- -GCGGCCG---GUGCCua--UGGU-GCGACaGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 33399 | 0.66 | 0.463632 |
Target: 5'- cCGCUGGCaauUACGGcacgGCCAcCGCUGgCGa -3' miRNA: 3'- -GCGGCCG---GUGCCua--UGGU-GCGACaGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 33255 | 0.66 | 0.463632 |
Target: 5'- cCGCUGGCaauUACGGcacgGCCAcCGCUGgCGa -3' miRNA: 3'- -GCGGCCG---GUGCCua--UGGU-GCGACaGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 4800 | 0.66 | 0.463632 |
Target: 5'- aCGCCGGCUggcgcuGCgGGAUugCugGCcggcgacagGUCGc -3' miRNA: 3'- -GCGGCCGG------UG-CCUAugGugCGa--------CAGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 5212 | 0.66 | 0.463632 |
Target: 5'- uGCUGGCCugcaacCGGAUACCcagcaguucGCGCaGuUCGg -3' miRNA: 3'- gCGGCCGGu-----GCCUAUGG---------UGCGaC-AGC- -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 33591 | 0.66 | 0.453827 |
Target: 5'- cCGCUGGCUaucGCGGcacgGCCAcCGCUGg-- -3' miRNA: 3'- -GCGGCCGG---UGCCua--UGGU-GCGACagc -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 1964 | 0.66 | 0.453827 |
Target: 5'- gCGCgCGGcCCugGGGgaaGgCACGCUGUa- -3' miRNA: 3'- -GCG-GCC-GGugCCUa--UgGUGCGACAgc -5' |
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26923 | 3' | -58.9 | NC_005809.1 | + | 13969 | 0.66 | 0.444135 |
Target: 5'- gCGCCGGUUcaaggaacugACcGAcACCACGCUGcCGg -3' miRNA: 3'- -GCGGCCGG----------UGcCUaUGGUGCGACaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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