miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26923 3' -58.9 NC_005809.1 + 5324 1.09 0.000378
Target:  5'- uCGCCGGCCACGGAUACCACGCUGUCGa -3'
miRNA:   3'- -GCGGCCGGUGCCUAUGGUGCGACAGC- -5'
26923 3' -58.9 NC_005809.1 + 30558 0.8 0.057069
Target:  5'- uCGCCGGCCACGG---CCGCGCUGcUGg -3'
miRNA:   3'- -GCGGCCGGUGCCuauGGUGCGACaGC- -5'
26923 3' -58.9 NC_005809.1 + 4017 0.79 0.065838
Target:  5'- gCGCCGGCCACcagcgucAUGCCGCGCggGUCGa -3'
miRNA:   3'- -GCGGCCGGUGcc-----UAUGGUGCGa-CAGC- -5'
26923 3' -58.9 NC_005809.1 + 28216 0.77 0.087425
Target:  5'- gGUCGGCCACGccGAcgACCACGCgcggGUCGg -3'
miRNA:   3'- gCGGCCGGUGC--CUa-UGGUGCGa---CAGC- -5'
26923 3' -58.9 NC_005809.1 + 21398 0.74 0.14023
Target:  5'- aGCaGGCCGCGcagcagGCCGCGCUGUUGa -3'
miRNA:   3'- gCGgCCGGUGCcua---UGGUGCGACAGC- -5'
26923 3' -58.9 NC_005809.1 + 37227 0.73 0.160638
Target:  5'- aGgCGGCCACGcagcgcGAUGCCAUGCUG-CGc -3'
miRNA:   3'- gCgGCCGGUGC------CUAUGGUGCGACaGC- -5'
26923 3' -58.9 NC_005809.1 + 11250 0.73 0.174135
Target:  5'- uCGCCGcGaCCugGGAUuccagccgggccACCACGCgGUCGc -3'
miRNA:   3'- -GCGGC-C-GGugCCUA------------UGGUGCGaCAGC- -5'
26923 3' -58.9 NC_005809.1 + 34461 0.72 0.193698
Target:  5'- aCGCCGGCCGCGcGGUGCagggccucaaACGCUuUUGg -3'
miRNA:   3'- -GCGGCCGGUGC-CUAUGg---------UGCGAcAGC- -5'
26923 3' -58.9 NC_005809.1 + 24576 0.72 0.204183
Target:  5'- gGCCGGCCACGGucggGCCGuccgGCgUGUCc -3'
miRNA:   3'- gCGGCCGGUGCCua--UGGUg---CG-ACAGc -5'
26923 3' -58.9 NC_005809.1 + 34620 0.71 0.226634
Target:  5'- gCGCCgaGGCCACGG--GCaa-GCUGUCGg -3'
miRNA:   3'- -GCGG--CCGGUGCCuaUGgugCGACAGC- -5'
26923 3' -58.9 NC_005809.1 + 41726 0.71 0.238625
Target:  5'- aGCCauacaGGCCACGGucgGCU-CGCUGUCu -3'
miRNA:   3'- gCGG-----CCGGUGCCua-UGGuGCGACAGc -5'
26923 3' -58.9 NC_005809.1 + 18014 0.7 0.251141
Target:  5'- gGCCGGCCuCGccaucGCCGCGCUGcgCGa -3'
miRNA:   3'- gCGGCCGGuGCcua--UGGUGCGACa-GC- -5'
26923 3' -58.9 NC_005809.1 + 4094 0.7 0.2576
Target:  5'- gGCCGGCCA-GGuggGCgGCGCUGaauUCGu -3'
miRNA:   3'- gCGGCCGGUgCCua-UGgUGCGAC---AGC- -5'
26923 3' -58.9 NC_005809.1 + 11962 0.7 0.264194
Target:  5'- uGCCGGUCAUGu-UGUCACGUUGUCGu -3'
miRNA:   3'- gCGGCCGGUGCcuAUGGUGCGACAGC- -5'
26923 3' -58.9 NC_005809.1 + 10528 0.7 0.270924
Target:  5'- cCGCCGGCCACGcuuuccgccGCCACGCgcaaCGg -3'
miRNA:   3'- -GCGGCCGGUGCcua------UGGUGCGaca-GC- -5'
26923 3' -58.9 NC_005809.1 + 22364 0.7 0.270924
Target:  5'- aGCCGGCCGCGG-----GCGCUGcCa -3'
miRNA:   3'- gCGGCCGGUGCCuauggUGCGACaGc -5'
26923 3' -58.9 NC_005809.1 + 8649 0.7 0.270924
Target:  5'- uCGCCGGCCuucaucgcGCGGucggcauugcGUGCCGCGCgcaccUCGg -3'
miRNA:   3'- -GCGGCCGG--------UGCC----------UAUGGUGCGac---AGC- -5'
26923 3' -58.9 NC_005809.1 + 29391 0.7 0.277791
Target:  5'- aCGCCGGCCAaGGGcGCCcaGCGCgGcCGa -3'
miRNA:   3'- -GCGGCCGGUgCCUaUGG--UGCGaCaGC- -5'
26923 3' -58.9 NC_005809.1 + 24422 0.7 0.277791
Target:  5'- aGCCGGCCcgauuuguCGG-UGCCGCGCg--CGg -3'
miRNA:   3'- gCGGCCGGu-------GCCuAUGGUGCGacaGC- -5'
26923 3' -58.9 NC_005809.1 + 5205 0.7 0.281978
Target:  5'- uGCCGGCUACcgugcccacgucgaGGAUguuggacGCCACGgUGUUGa -3'
miRNA:   3'- gCGGCCGGUG--------------CCUA-------UGGUGCgACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.