Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26923 | 5' | -54.7 | NC_005809.1 | + | 39649 | 0.66 | 0.667647 |
Target: 5'- cGGUGugGGCCGGCAUGggaaUgGGCAagacGGUu -3' miRNA: 3'- -CCGCugUCGGUUGUACg---AgCUGU----CCA- -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 11421 | 0.66 | 0.678874 |
Target: 5'- aGCGGCgAGCCGGCGUGCaggucgcCGAUaAGGc -3' miRNA: 3'- cCGCUG-UCGGUUGUACGa------GCUG-UCCa -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 25744 | 0.66 | 0.656385 |
Target: 5'- cGGCGGCAGCaCGcuggGCGcgcUGCUgGGCGGcGg -3' miRNA: 3'- -CCGCUGUCG-GU----UGU---ACGAgCUGUC-Ca -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 24623 | 0.66 | 0.678874 |
Target: 5'- aGCGGCAcGUCGaaccacaugGCGUGC-CGGCGGGc -3' miRNA: 3'- cCGCUGU-CGGU---------UGUACGaGCUGUCCa -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 23652 | 0.66 | 0.678874 |
Target: 5'- cGGCGGCGGgCAGCAacUGCaccaggcgacccUCGGuCGGGc -3' miRNA: 3'- -CCGCUGUCgGUUGU--ACG------------AGCU-GUCCa -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 4513 | 0.66 | 0.656385 |
Target: 5'- gGGCGGC-GCCcgugaacguGGCGUGCUgGGCGGu- -3' miRNA: 3'- -CCGCUGuCGG---------UUGUACGAgCUGUCca -5' |
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26923 | 5' | -54.7 | NC_005809.1 | + | 9280 | 0.66 | 0.678874 |
Target: 5'- cGCGAUAGCCAGCGgugGC-CGuGCcGGa -3' miRNA: 3'- cCGCUGUCGGUUGUa--CGaGC-UGuCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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